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Name : CFSAN001992_10120 (CFSAN001992_10120) Accession : YP_007471766.1 Strain : Salmonella enterica CFSAN001992 Genome accession: NC_020307 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein StiC Function : - COG functional category : - COG ID : - EC number : - Position : 2020489 - 2023035 bp Length : 2547 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGCGCAAAAGGCAACACCGGGGATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACATGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAACACCATGGGCAGGCGAATCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAACTTCCTGGCACCTATTACGTCACTATCATTATCAACAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTTCAGGAACTAAAAGA TAGCGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAAGCTGCGTCGATCTCAGCGCTATCCCCGGTGCCA GCCAGCAGTTTGATTTTCAGCAACAGGCATTATCGATAAGCATCCCTCAACTCTACATCGCCAACAACACGCGCGGCTAC GTGCCGCCGGAAAAGTGGCAGGAGGGAATTACCGCGCTAATGCTGAACTACAGTTTCAGCGGCTATAAAGAGTACGGTTC CAGTGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGCGCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGTTCAAACG CGCAGGTTATCGTGCGGCAAAACGGTTATATCGCCTATCAAACTGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTACGACGTGACGGTAAAAGAAGCCGACGGTAGCGAACAGCATTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGTAATTACGACAACC ACACGCTGGACGACTTCGGCCAGGCGACCCTGCTGTACGGCCTGCCGTGGGGTATCACGCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGTAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAGCCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCAGTCAACCAGCAAATTAGCGATACGCT CGGTTCCTTAACGCTAAGTTGGGTAAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCTCTGAGCGCCAACTACA ACAATAGCTGGGGCCCGGTGAGCTATACGTTAAGCTACAGCTATAACAAAAACACCTACCAGTACCGATCGGATAATGAC GATGATGATAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCATGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCTACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAGAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTACAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCAGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACTCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCCGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGCGCTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTCCTGGTGAACTGGGGAAGCGCCTCTTGCCGCGC GGATTACCGTCTGGATATCAGCAAAAATATGAACGGCATCGTGATGGCGAACGCCGTCTGCCAGTGA Protein sequence : MRKRQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKSQLPGTYYVTIIINKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDSGVKTDLFPTLESEKSCVDLSAIPGASQQFDFQQQALSISIPQLYIANNTRGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRNYDNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 3e-137 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN001992_10120 | YP_007471766.1 | fimbrial outer membrane usher protein StiC | VFG0454 | Protein | 6e-146 | 42 |
| CFSAN001992_10120 | YP_007471766.1 | fimbrial outer membrane usher protein StiC | VFG0912 | Protein | 6e-131 | 41 |
