Gene Information

Name : CFSAN001992_08430 (CFSAN001992_08430)
Accession : YP_007471434.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Resistance
Product : transposon Tn10 TetD protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1663105 - 1663446 bp
Length : 342 bp
Strand : -
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGGGGCGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCGCGACACCGACCAGAAGGTGTATGATATTTGTCTAAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAATCATGGCCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYVRERKLKLAARDLRDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKENHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-19 49
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-17 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-17 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP001138.1.gene612.p Protein 9e-44 99
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP001918.1.gene327.p Protein 1e-19 49
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP000647.1.gene4499. Protein 2e-19 49
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP001138.1.gene4488. Protein 2e-19 49
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein NC_002695.1.914293.p Protein 2e-18 46
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein BAC0371 Protein 2e-18 46
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP000647.1.gene1624. Protein 2e-18 46
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein NC_010558.1.6276025. Protein 1e-17 46
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP000034.1.gene4505. Protein 4e-18 45
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP001918.1.gene2033. Protein 1e-18 45
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP001138.1.gene1637. Protein 9e-19 44
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein BAC0560 Protein 5e-19 43
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein NC_002695.1.917339.p Protein 5e-19 43
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein CP000034.1.gene1596. Protein 5e-19 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein VFG0585 Protein 2e-19 49
CFSAN001992_08430 YP_007471434.1 transposon Tn10 TetD protein VFG1038 Protein 1e-17 46