Gene Information

Name : CFSAN001992_06200 (CFSAN001992_06200)
Accession : YP_007470996.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : secreted effector protein PipB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1196033 - 1196908 bp
Length : 876 bp
Strand : +
Note : COG1357 Uncharacterized low-complexity proteins

DNA sequence : 
ATGCCAATAACTAACGCGTCCCCAGAAAATATATTAAGATATTTGCATGCGGCCGGTACCGGTACGAAAGAAGCAATGAA
AAGTGCAACTTCACCACGCGGTATACTGGAATGGTTTGTCAATTTTTTTACCTGTGGTGGAGTAAGAAGAAGCAATGAAA
GATGCTTTCAGGAGGTAATTGGAAAACTGACCACATCATTATTATATTTAAATAAAGATGCTTTCTTCGATGGTAATAAA
ATATTTCTGGAGGATGTCAACGGGTGTACTATATGTCTGTCATGTGGAGCAGCATCCGAAAATACGGATCCCATGGTCAT
TATTGAAGTGAACAAAAATGGAAAAACTGTAACGGATAACGTTGATAGTGAGAGATTTTGGAATGTATGTCGAATGTTAA
AGCTGATGAGTAAACATAATATACAACAGCCTGATTCACTTATAACCGAGGATGGTTTTCTGAACCTGCGCGGAGTAAAC
CTGGCTCATAAAGATTTCCAGGGGGAAGATTTGTCAGAAATAGATGCTTCTGATGCAGATTTCCGTGAAACAACTCTTTC
TAATGTAAATTTAGTCGGTGCAAATTTGTGTTGTGCAAATCTACACGCTGTAAATCTAATGGGTTCAAACATGACTAAAG
CAAACCTGACTCACGCAGACCTGACTTGCGCTAACATGTCCGGTGTAAACTTAACCGCTGCAATTCTATTCGGCTCAGAC
TTAACTGGCACCAAACTAAATGGTGCAAAATTAGATAAGATAGCTCTAACTTTAGCGAAAGCATTAACAGGAGCCGATCT
GACAGGTAGTCAACATACCCCTACTCCACTCCCGGATTACAATGATGAAACTCTCTTCCCCCATCCGATATTTTAG

Protein sequence : 
MPITNASPENILRYLHAAGTGTKEAMKSATSPRGILEWFVNFFTCGGVRRSNERCFQEVIGKLTTSLLYLNKDAFFDGNK
IFLEDVNGCTICLSCGAASENTDPMVIIEVNKNGKTVTDNVDSERFWNVCRMLKLMSKHNIQQPDSLITEDGFLNLRGVN
LAHKDFQGEDLSEIDASDADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSD
LTGTKLNGAKLDKIALTLAKALTGADLTGSQHTPTPLPDYNDETLFPHPIF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pipB YP_216027.1 pathogenicity island encoded protein: SPI3 Virulence SPI-5 Protein 4e-128 97
pipB NP_455586.1 conserved hypothetical protein Virulence SPI-5 Protein 7e-129 97
pipB AAC33725.1 PipB Virulence SPI-5 Protein 1e-128 97
pipB NP_460061.1 secreted effector protein Virulence SPI-5 Protein 5e-128 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_06200 YP_007470996.1 secreted effector protein PipB VFG0589 Protein 2e-128 97