Gene Information

Name : CFSAN001992_06165 (CFSAN001992_06165)
Accession : YP_007470989.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein YedW
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1188427 - 1189023 bp
Length : 597 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGT
TGATTATGCCTGTGATGGACGAGACGGATTACACCTGGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGC
TGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCTGTTATTTGCCTGACGGCGCGC
GACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACT
GCTGGCCCGGGTGAGAGCTCAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATG
CCACAAAGCAATCGGTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTGGCG
TCCCGGGCAGGAGAAATCGTGCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACC
GTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTAG

Protein sequence : 
MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAYQPPVICLTAR
DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLA
SRAGEIVPEPRSPAKFGELTLIVKPTPLMSRFVGCAPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-74 98

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0197 Protein 2e-39 57
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0083 Protein 1e-37 56
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0347 Protein 3e-36 53
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0308 Protein 2e-36 52
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0111 Protein 2e-36 51
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0125 Protein 7e-38 51
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW BAC0487 Protein 4e-25 43
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_002758.1121390.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_010079.5776364.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_002952.2859858.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_007622.3794948.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_003923.1003417.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_013450.8614146.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_002951.3238224.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW NC_007793.3914065.p0 Protein 1e-26 42
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW AE015929.1.gene1106. Protein 3e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW VFG0596 Protein 7e-75 98
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW VFG0473 Protein 7e-24 43
CFSAN001992_06165 YP_007470989.1 transcriptional regulatory protein YedW VFG1390 Protein 3e-26 41