Gene Information

Name : CFSAN001992_05630 (CFSAN001992_05630)
Accession : YP_007470884.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1085467 - 1086144 bp
Length : 678 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGAATAAATATAGTTTACTCACTGCCGCCACGCTTATATTCACTACGGCAACCGTACAGGCCGGTGTTATTATCGGCGG
AACCCGTATTATTTATAACGGCGATAAAAAAGAAACGTCGATTAGCGTTAAAAATCCGGACCAATCTTCTTATCTCATTC
AGTCATGGAGTGACGCCGGGGAAAAAAGCAGCGATAAATCGCCGTTTATGGTCACGCCGCCGCTTTTTCGTTTAGGCGCA
GGGCAGGAAAATAATCTGCGAATTCTCCGTACTGGCGGCAATCTGCCGGAAGATCGTGAATCCCTCTACTGGATGAATAT
TAAGTCGATCCCATCGACGACGGAAAAGCAGGATAACGTTAACACTCTGCAAATTGCGGTGAAAACCCGCATTAAATTAA
TTTACCGTCCGCAGGCGTTGACGGAGCAACCGGAAAACGTCACCGCGAAGCTGACCTGGCAGCACAGCGGTAACCGTCTT
ACCGTGACCAATCCCACAGCCTACTATATGAACTTCAGCACGGTGAAGATAGGAACCAGCACCGTGAAAGACGCTACCTA
TGTCGCGCCGATGAGTTCCGCCAGCTTTACCGCGCCCGCCGAGGCCAGCGGCGACGTAACCTGGACACTTATTAACGATT
TCGGCTCTATCGGGTCTGAACACCACACACGCCTGTGA

Protein sequence : 
MNKYSLLTAATLIFTTATVQAGVIIGGTRIIYNGDKKETSISVKNPDQSSYLIQSWSDAGEKSSDKSPFMVTPPLFRLGA
GQENNLRILRTGGNLPEDRESLYWMNIKSIPSTTEKQDNVNTLQIAVKTRIKLIYRPQALTEQPENVTAKLTWQHSGNRL
TVTNPTAYYMNFSTVKIGTSTVKDATYVAPMSSASFTAPAEASGDVTWTLINDFGSIGSEHHTRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 5e-40 43
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-36 41
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 2e-34 41
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_05630 YP_007470884.1 chaperone protein FimC VFG0875 Protein 2e-40 43
CFSAN001992_05630 YP_007470884.1 chaperone protein FimC VFG0911 Protein 1e-36 41
CFSAN001992_05630 YP_007470884.1 chaperone protein FimC VFG1644 Protein 1e-36 41
CFSAN001992_05630 YP_007470884.1 chaperone protein FimC VFG0943 Protein 1e-32 41