Gene Information

Name : Cspa_c56010 (Cspa_c56010)
Accession : YP_007458583.1
Strain : Clostridium saccharoperbutylacetonicum N1-4(HMT)
Genome accession: NC_020291
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6270618 - 6271304 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACAAATATTAATTATTGAAGATGATATAAACATTGCAGAATTAGAAAAAGAATATCTTCAATTAAATGGGTATAA
AGTAGAAATAGTTCAAGATGGAAATCAAGGTTTAAAAAGAGCCCTTATGGGTATATTTGATCTCGTTATTGTTGATTTAA
TGCTTCCTGGTAAAGATGGATATTCAATAGTAGAAGAAATTAGAAAAAAATATGAAATACCAGTAATAATTGTTTCAGCA
AGAAGTGAGGATATTGATAAGATAAAAGGATTGGGATTTGGAGCGGATGATTATTTAACCAAACCTTTTAGTCCAGCAGA
ATTAGTAGCTAGAATAAAATCTCATATAATTAGATATGAAAGATTATCAGGAAATAAAACTCAAGCCAGTGTTATTACTC
ACAAAGCTTTAGAGATAATGACAGATTCTCATAAGGTTTTCGTAAATGGAAAAGAAGTTATCTTAACCACAAAAGAATAT
GAACTTTTAGTTTTTTTAGCTTCTAATCCTAATATAGTTTTTACTAAAGATCAACTATTTGACAGGATATGGGGAGAAGG
GTATTTTGGAGATACAGCAACTGTAGCTGTTCATATACAAAAGTTAAGGAAAAAGATTGAGAAAGATCCTGGAAGCCCAG
ATTATATTGAAACTCTTTGGGGAACAGGGTATAGGTTTAATTCATAA

Protein sequence : 
MKQILIIEDDINIAELEKEYLQLNGYKVEIVQDGNQGLKRALMGIFDLVIVDLMLPGKDGYSIVEEIRKKYEIPVIIVSA
RSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHIIRYERLSGNKTQASVITHKALEIMTDSHKVFVNGKEVILTTKEY
ELLVFLASNPNIVFTKDQLFDRIWGEGYFGDTATVAVHIQKLRKKIEKDPGSPDYIETLWGTGYRFNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-37 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 1e-46 43
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 5e-32 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family AE015929.1.gene1106. Protein 1e-28 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family AM180355.1.gene1830. Protein 5e-43 42
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family FJ349556.1.orf0.gene Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family VFG1563 Protein 4e-37 43
Cspa_c56010 YP_007458583.1 two component transcriptional regulator, winged helix family VFG1702 Protein 5e-37 43