Gene Information

Name : Cspa_c47910 (Cspa_c47910)
Accession : YP_007457798.1
Strain : Clostridium saccharoperbutylacetonicum N1-4(HMT)
Genome accession: NC_020291
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.34
Position : 5255375 - 5256181 bp
Length : 807 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGAAAATGAGCAATTACTTGAAGCAAAAGATATTGTAACTGGATACGACAAAAAGATAATAGTTGATGGAATTGA
TATAGTTATTCCTAGCAATAAAATTAGTGTTATACTTGGAGCAAATGCATGCGGGAAATCAACATTACTTAAAACACTGG
CTAGGCTTATTAAGCCTATCTCAGGAAAAGTTCTAATTGATGGCAAAAAAATAACTTCAATGCCTTCTAAAAAGTTAGCA
CAGATCTTAGGATTACTTCCACAATCACCGGTAGTTCCAGAAGGCATAACTGTTTGGGATTTAGTTTCAAGAGGAAGGTT
CCCGTATCAATCTTTTTTAAAAAGCATGAGTCAAAAGGATTTTGAAGCAATAGAGGAAGCACTTGAAATAATGGGAATAA
CAGAACTTGCAAATAGATGTGTTGATGAATTATCAGGGGGACAGCGTCAAAGAGTTTGGATTGCTATGGCTCTTGCGCAA
CAAACAGATATACTTCTTTTAGATGAACCGACTACATATCTTGATATTGCTTATCAAGTAGAAATTCTTGATTTATTAAC
AGATTTAAATAAAAAAAGAGGAACTACTATTGTAATGGTGCTTCATGATATAAATTTATCTGCTAGATATGCAGATTATA
TATTTGCTCTTCGTGAAGGGAAATTAATTGATAAAGGTGAACCAGAAAAAGTTATAACTTCAGAATTAATTTGGACAGTA
TTTGGATTGAATTGTGTCGTTATACAAGATCCAGTATCAAATTCACCATTTATTGTGCCAAAGGGAAGGCATTATTCTGA
TAATTAA

Protein sequence : 
MNENEQLLEAKDIVTGYDKKIIVDGIDIVIPSNKISVILGANACGKSTLLKTLARLIKPISGKVLIDGKKITSMPSKKLA
QILGLLPQSPVVPEGITVWDLVSRGRFPYQSFLKSMSQKDFEAIEEALEIMGITELANRCVDELSGGQRQRVWIAMALAQ
QTDILLLDEPTTYLDIAYQVEILDLLTDLNKKRGTTIVMVLHDINLSARYADYIFALREGKLIDKGEPEKVITSELIWTV
FGLNCVVIQDPVSNSPFIVPKGRHYSDN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-68 59
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-68 59
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-59 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-46 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-46 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-46 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-46 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-46 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-43 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 4e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c47910 YP_007457798.1 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component BAC0164 Protein 2e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c47910 YP_007457798.1 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component VFG0925 Protein 2e-58 47
Cspa_c47910 YP_007457798.1 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component VFG1042 Protein 2e-43 42