Gene Information

Name : Cspa_c33830 (Cspa_c33830)
Accession : YP_007456398.1
Strain : Clostridium saccharoperbutylacetonicum N1-4(HMT)
Genome accession: NC_020291
Putative virulence/resistance : Resistance
Product : Two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3686317 - 3687015 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
GTGAAAAAAATATTAATTATTGAAGATGATGAGAGTATTGCAGAGTTAGAAAAAGATTATCTTGAGATAACTGGATTTGC
AACAAAAATTGCATTAGATGGAATTCAAGGGGGGGAATTAGCTTTAAACGAAGATTTTGATTTAATATTGTTAGATGTTA
TGTTGCCTGGAAAAGATGGATTTAAAGTTTGCCAAGAAATCAGAGAAGTTAAAGAAATTCCAATTTTAATGGTTACTGCT
AAAAAAGAAGACATTTACAAAATTCAAGGGCTTGGCATAGGCGCAGATGATTACATTGTAAAACCTTTTAGTCCGAGTGA
ACTTGTAGCGCGAGTAAATGCTCATATTTCAAGATACGAGCGGTTGACTTCTGTAGAAAAGAATAATTCAAAGGAAAAAA
GTTCGATAGCTATTGGGAGAATTAAAATTTTACTTAAAGCAAGAAGAGTTTATATAGAGGAAGAGGAAGTAAAGTTTGCC
AATAAGGAATTTGAATTATTATTATTTTTGGCTTCAAATCCTAATATAGTATTTTCAAAGGATGCATTGTTAGATAGAAT
TTGGGGAGAAGAATCTTTAGGGGATAATTCAACTGTAACAGTACATATCAACAGAATAAGGGAAAAAATTGAATTAGATA
GTAGCAACCCACAATATATTGAAACTGTTTGGGGGGCAGGATATAGATTTAATATTTAA

Protein sequence : 
MKKILIIEDDESIAELEKDYLEITGFATKIALDGIQGGELALNEDFDLILLDVMLPGKDGFKVCQEIREVKEIPILMVTA
KKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYERLTSVEKNNSKEKSSIAIGRIKILLKARRVYIEEEEVKFA
NKEFELLLFLASNPNIVFSKDALLDRIWGEESLGDNSTVTVHINRIREKIELDSSNPQYIETVWGAGYRFNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0907 YP_001198273.1 NisR Not tested 89K Protein 4e-22 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 7e-43 46
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 4e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 4e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 4e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 6e-38 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family AM180355.1.gene1830. Protein 3e-37 42
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 2e-37 41
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 3e-40 41
Cspa_c33830 YP_007456398.1 Two component transcriptional regulator, winged helix family DQ212986.1.gene4.p01 Protein 9e-35 41