Gene Information

Name : Cspa_c33800 (Cspa_c33800)
Accession : YP_007456395.1
Strain : Clostridium saccharoperbutylacetonicum N1-4(HMT)
Genome accession: NC_020291
Putative virulence/resistance : Virulence
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3682651 - 3683388 bp
Length : 738 bp
Strand : -
Note : -

DNA sequence : 
TTGAGTAAAAATGTAATAGATATGAAAAATATTACAAAAAGCTTTTATATAGGAACTCCAAATCAATTGAATATTTTAAA
GGGCATTGATATTACAGTGAAGGAAGGCGAATTTGTATCGATAATTGGTTCTTCTGGATCAGGAAAAAGTACTTTAATGA
ATATTATTGGTGCTCTTGATAGAGCCACTTCTGGTGAATATGTTTTAGACGGAACAAATATCAATGAAATATCAGATGAT
GGTTTGTCAGAAGTAAGAAATAAGCAAATAGGTTTTGTATTTCAAACTTATAATCTTATGCCAAGAAGTACAGCTTTGAG
TAATGTTGAATTACCTCTTCTTTATTATGGCATGAATAGAAAACAGAGACGAGAGCGAGCAGAAGAACTTTTAGATTTAG
TTGGAATGAAAGATAGAATGGCTCACAGACCTAATGAATTATCAGGAGGACAAAAACAAAGAGTTGCAATTGCTAGGGCT
CTTGCAACGAATCCTAGCATAATTCTTGCTGATGAACCAACAGGAGCACTTGATTCGGCAACAGGAAGAATGGTCATGGA
TTTATTTCATAAAGTTCATGAACAAGAAGGTAAAACCATTGTATTTATAACCCATAATAACGAACTTGCAGATGAAACAC
AGCGAATTATAACATTAAAAGATGGTAATATAATTTCCACTATGGAAAATAGTAATTACTATAGAAGATATCAAGAAGAG
GAAAAGATATGTTTATAA

Protein sequence : 
MSKNVIDMKNITKSFYIGTPNQLNILKGIDITVKEGEFVSIIGSSGSGKSTLMNIIGALDRATSGEYVLDGTNINEISDD
GLSEVRNKQIGFVFQTYNLMPRSTALSNVELPLLYYGMNRKQRRERAEELLDLVGMKDRMAHRPNELSGGQKQRVAIARA
LATNPSIILADEPTGALDSATGRMVMDLFHKVHEQEGKTIVFITHNNELADETQRIITLKDGNIISTMENSNYYRRYQEE
EKICL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-25 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-26 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c33800 YP_007456395.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 6e-48 55
Cspa_c33800 YP_007456395.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 1e-32 45
Cspa_c33800 YP_007456395.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 5e-33 44
Cspa_c33800 YP_007456395.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 3e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cspa_c33800 YP_007456395.1 ABC-type antimicrobial peptide transport system, ATPase component VFG0869 Protein 2e-21 41