Gene Information

Name : KSO_017695 (KSO_017695)
Accession : YP_007446903.1
Strain : Bacillus amyloliquefaciens IT-45
Genome accession: NC_020272
Putative virulence/resistance : Virulence
Product : Transcriptional regulatory protein yycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3551546 - 3552229 bp
Length : 684 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAGATATTAATGGTAGAAGACAATATAAGCGTATGCACCATGACGGAAATGTTCTTTTTTAAAGAAGGATTTGAAGC
CGAATTTGTCCATGACGGAGTGGAAGGCTATCAGCGGTTCACGGAAGAGGACTGGGATTTGGTCATTCTGGATATTATGC
TTCCATCTATGGACGGAGTGACGATCTGCCGGAAAATAAGAGAGACGAGCAGTGTGCCGATTATTATGCTGACCGCAAAG
GACACGGAGTCTGATCAGGTGATCGGGTTTGAAATGGGAGCCGACGACTATGTCACCAAGCCGTTCAGCCCGCTGACGCT
AGTAGCGCGGATTAAAGCGGTGATCAGAAGATACCGGGCGACGGGGCAGGCCGTAAAAAGCGGCGACTTGATCGAAACGG
CGTGTTTTTCAATCAATAAGAAGACGCGGGAAGTGTTTCTGCATGGAAAGCCTGTCGAGAATCTGACGCCGAAGGAATTC
GATCTGCTCTTTTATCTCGCACAAAATCCGCGCCAGGTCTTTTCGAGAGAGCAGCTGCTTGAGCAGGTGTGGGGCTATCA
ATTTTACGGCGATGAACGTACGGTTGATGTTCATATTAAACGGCTGCGCAAAAAACTGTCCAGTGACGCAAAACCGTTTT
TATACACGGTGTGGGGGGTAGGATACAAATTTGATGAGGATTAA

Protein sequence : 
MKILMVEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVTICRKIRETSSVPIIMLTAK
DTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRATGQAVKSGDLIETACFSINKKTREVFLHGKPVENLTPKEF
DLLFYLAQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLSSDAKPFLYTVWGVGYKFDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-41 46
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-41 46
mprA YP_005680459.1 response regulator mprA Not tested PiCp 3 Protein 1e-23 41
mprA YP_005682550.1 response regulator mprA Not tested PiCp 3 Protein 1e-23 41
tcsR1 YP_003782583.1 two-component system transcriptional regulatory protein Not tested PiCp 3 Protein 1e-23 41
mprA YP_005684640.1 response regulator mprA Not tested PiCp 3 Protein 1e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_012469.1.7685629. Protein 1e-41 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF AF155139.2.orf0.gene Protein 2e-42 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF HE999704.1.gene2815. Protein 3e-45 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002952.2859905.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002758.1121668.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_007622.3794472.p0 Protein 2e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_009641.5332272.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_013450.8614421.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_007793.3914279.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002745.1124361.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_009782.5559369.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002951.3237708.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_003923.1003749.p0 Protein 3e-43 44
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF DQ212986.1.gene4.p01 Protein 7e-39 43
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF AE016830.1.gene1681. Protein 1e-41 43
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002952.2859858.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_007622.3794948.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_003923.1003417.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_013450.8614146.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002951.3238224.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_007793.3914065.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_002758.1121390.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_010079.5776364.p0 Protein 1e-34 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF FJ349556.1.orf0.gene Protein 3e-41 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF AM180355.1.gene1830. Protein 6e-36 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF AE000516.2.gene3505. Protein 3e-39 42
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_010410.6002989.p0 Protein 2e-38 41
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_010400.5986590.p0 Protein 8e-38 41
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_011595.7057856.p0 Protein 2e-38 41
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_014475.1.orf0.gen Protein 9e-40 41
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF NC_005054.2598277.p0 Protein 9e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF VFG1563 Protein 1e-41 46
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF VFG1702 Protein 1e-41 46
KSO_017695 YP_007446903.1 Transcriptional regulatory protein yycF VFG1389 Protein 1e-31 43