Gene Information

Name : CSSP291_04240 (CSSP291_04240)
Accession : YP_007439734.1
Strain : Cronobacter sakazakii Sp291
Genome accession: NC_020260
Putative virulence/resistance : Virulence
Product : putative DNA repair protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 893960 - 894436 bp
Length : 477 bp
Strand : -
Note : COG2003 DNA repair proteins

DNA sequence : 
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACACGACCGGCGTCTCATCCAGCGGGCGCTCAGGGCGCTGGA
CCGGCACCTGCATGAGCCCGGCGTGGCCTTCACCTCCACCCATGCTGTCCGTGAATGGCTGCGACTGCATATGGCCGCAC
TTGAGCGGGAAGCGTTCCGGGTGCTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACTGAAGTCCATCCCCGGGAAGTGGTCAAACGTGCTCTGCATTTCAACGCGGCGGCGGTGATACTGGCGCA
TAACCATCCTTCCGGTGAGACAACACCCAGCCAGGCTGACAAAGCCCTCACGCAGCGACTGGTGCAGGTGCTTCAGCTGG
TGGATATCCGCGTCCCTGACCACCTGATTGTTGGCGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGTTGTGA

Protein sequence : 
MKQLSFLPGEMTPHDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREAFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKALTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 6e-54 82
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-54 82
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 6e-54 82
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-53 82
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-54 82
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 3e-53 82
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 6e-54 82
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 5e-54 82
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-54 82
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 8e-54 82
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 7e-54 82
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-54 81
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-53 81
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-53 81
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 7e-54 81
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-54 81
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-52 80
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 8e-52 80
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 8e-49 80
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-19 54
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-21 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-21 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-21 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-24 47
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 9e-22 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG1528 Protein 4e-54 82
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG1678 Protein 2e-54 82
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG1066 Protein 9e-54 81
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG0660 Protein 2e-54 81
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG1617 Protein 9e-53 80
CSSP291_04240 YP_007439734.1 putative DNA repair protein VFG1119 Protein 2e-21 50