|
Name : CSSP291_12035 (CSSP291_12035) Accession : YP_007441279.1 Strain : Cronobacter sakazakii Sp291 Genome accession: NC_020260 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 2514896 - 2517358 bp Length : 2463 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : GTGCAAGCGAGGGCAGATGATTATTTCAACCCGGCATTGCTGGATATTGATAATCCTTCGCAGGGTAAAACCGATTTAAC GCTTTATGAAAAAGGTCCAGGTGCGGCACCGGGGAAATACCGTGTCGATATTTATATTAATAATGAACGCATCGATACCC GGGAGATAGAATTTACGCTTAAAACCGCGTCCGATGGTAGCAGCACGCTGCAACCCTGCTTCACTCTCGAAGATTTGAAA AGCCTGGGAGTGAAGACTGACGAGTTTGATGCGTTAGACGCAGATGCGAAATGCGTTGACCTTTCGGCCATCCCCTCTGC CAGCGCGCGTTTTGATGTCGGCCGCCAGCAACTCCAGCTTAGCATTGCGCAAAGCGCGCTGGGCCAGGTGCCGCAGGGGT ATATACCGCCTGAGGAATTTAACGAAGGCATTAACGCGCTGTTGTTTAACTACAGCGTGAACGGCTCGCGCCAGAAAGCG CTGACGCCGGATGCGCAGGACAGCCGCAATCTCTACGCCAACCTGCGTCCGGGCATTAATCTCGGCCCCTGGCGGCTGCG CAACTACTCTACCTGGAGCCGCAACGCAGACCACTCGGGCACTCAGGAGAAGTTCTCCAGCGTCTATACCTACGCAGAGC GCGACATTGTTGCTCTGAAAAGCGAGCTGACCCTGGGCCAGAGCAGCTCACCCGCGGATGTCTTCGACAGCATTCCTTTT ACCGGTGCGCAGCTTGCCTCTGACGACGACATGCTGCCTGACAGCCTGCGCGGTTACGCCCCCGTGGTACATGGCATCGC ACGCAGTAACGCCCAGGTGATTATTCGCCAGAACGGGTATCTCATCTCCCAGACTAACGTCGCGCCTGGCGCATTTGAAA TTAACGATCTCTACCCGAGCGGTAGCAGTGGCGATCTCAACGTAACGGTGAAAGAGAGCGACGGCAGCGAACAGCATTTT GTCGTGCCTTATGCTTCTGTTCCGGTTCTGCAACGCGAAGGACGGTTGAAATATAGCCTTACCGGCGGGCGCTACCGTTC GTATGACGAAAGCGTTTTATCCACTGCGTTTATGCAAGGCACGGCCGTTTATGGCCTGCCACACGGGTTTACGCTTTACG GCGGCATTCAGGCAAGCCAGCCCTACCATTCGCTGGCGCTGGGCGTCGGAGAAAACGTGGGGGATTTTGGCGCATTCTCG CTGGATGTCACTGAAGCGAAAGCCACCTTATCGTCAGGTGAGACACAGAAAGGCCGTTCGTGGCGTGCCCGCTACAGCAA GGATATCGCGCTGACGGGTGCCACGCTCTCGGTGGCGGGTTACCGCTTTAGCAGCGAGAACTATTACGCCATGCAGGATG TTTTTGACACGATGCGCCGCGATAACCAGTGGGCAGACACGCTGCATCGCCGTAGCCGTGAAGAGCTAACGCTTGAGCAG CCGCTGGGCGACGCGCTGGGTTCGCTGAACGCCAGCCTGATTCAGGAAAATTACTGGAACAGCAGCAAAACGATGTCTTC ACTTAGCGTCGGTTACAACAATAGCTGGCACGATATCAGTTACGGGCTTAATTACAGCCTGAACCGTAATACCAGTGAAA ATGGCTACGGCGAACCGGAGCATGAAAAGGACAGCGTCTTTTCTCTCACTCTCTCCATTCCGCTTGAACGCTGGTTGCCC AATACCTGGGCAAGCTACAACCAAAGCCACAGCAAGCAGGGCACCACGCAGAACATCGGCCTTAACGGAACGGCGCTTTC GGATAACAACCTCAACTGGAATATCCAGCAGAGCCAGGACAGTCAAGGCCAGATGCGTAACACCTCACTTAATGCCGATT ACAAAGGCGCTTACGGCGAACTGAGCGCGGGTTACGGGCAGGATTTCAGCCAGCGGCAAATCCATTACGGCATTCAGGGC GGGCTTATCGCCCACGCTAACGGCATCACACTTGGCCAGCCGATGGGTGAAACGGTGGCGCTGGTCGAAGCGCCGGGCGC AAATGATACCGCTATTCACAACCAGACCGGCGTCAGAACCGATGGTCGTGGATACACCATTTTACCGTTTATCAGTCCCT ACCGGCGCAATACCGTCGCGCTGGATACCGAAACGCTGCCCGCCGACGCTGATGTGACGCAGGCGGTACAGACCGTAACG CCCACGCGCGGCGCGGTAGTACGGGCCCGTTTCGATACCCGAACCGGCGCGCGCGTACTGATGACGCTGCACCTGGCTGA TGGTCGCCCGGTGCCGTTTGGCGCGACCGCAACCGCGGATGATACCGCAGAAGAATTTATCGTCGGCGAAAATGGCCAGG TTTATCTGACCGGTCTTCAGCCGAAAGGCACGCTGCAGGTGAGCTGGGGCGCTAACGCCAGCCAGCGCTGCACCGCCGCA TGGCGTCTTCCCACCGGGAATGGCGACAGCCAGTTTATTAACCTCTCCGCGCAATGCCTTTAA Protein sequence : MQARADDYFNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDIYINNERIDTREIEFTLKTASDGSSTLQPCFTLEDLK SLGVKTDEFDALDADAKCVDLSAIPSASARFDVGRQQLQLSIAQSALGQVPQGYIPPEEFNEGINALLFNYSVNGSRQKA LTPDAQDSRNLYANLRPGINLGPWRLRNYSTWSRNADHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFDSIPF TGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEINDLYPSGSSGDLNVTVKESDGSEQHF VVPYASVPVLQREGRLKYSLTGGRYRSYDESVLSTAFMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFS LDVTEAKATLSSGETQKGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFDTMRRDNQWADTLHRRSREELTLEQ PLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTSENGYGEPEHEKDSVFSLTLSIPLERWLP NTWASYNQSHSKQGTTQNIGLNGTALSDNNLNWNIQQSQDSQGQMRNTSLNADYKGAYGELSAGYGQDFSQRQIHYGIQG GLIAHANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTETLPADADVTQAVQTVT PTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGATATADDTAEEFIVGENGQVYLTGLQPKGTLQVSWGANASQRCTAA WRLPTGNGDSQFINLSAQCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 4e-145 | 42 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 1e-145 | 42 |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 5e-136 | 41 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 2e-127 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CSSP291_12035 | YP_007441279.1 | hypothetical protein | VFG0454 | Protein | 2e-147 | 43 |
| CSSP291_12035 | YP_007441279.1 | hypothetical protein | VFG0876 | Protein | 4e-146 | 42 |
| CSSP291_12035 | YP_007441279.1 | hypothetical protein | VFG1645 | Protein | 8e-146 | 42 |
| CSSP291_12035 | YP_007441279.1 | hypothetical protein | VFG0912 | Protein | 6e-147 | 42 |
| CSSP291_12035 | YP_007441279.1 | hypothetical protein | VFG0446 | Protein | 4e-138 | 41 |
