Gene Information

Name : CSSP291_12035 (CSSP291_12035)
Accession : YP_007441279.1
Strain : Cronobacter sakazakii Sp291
Genome accession: NC_020260
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2514896 - 2517358 bp
Length : 2463 bp
Strand : +
Note : COG3188 P pilus assembly protein, porin PapC

DNA sequence :
GTGCAAGCGAGGGCAGATGATTATTTCAACCCGGCATTGCTGGATATTGATAATCCTTCGCAGGGTAAAACCGATTTAAC
GCTTTATGAAAAAGGTCCAGGTGCGGCACCGGGGAAATACCGTGTCGATATTTATATTAATAATGAACGCATCGATACCC
GGGAGATAGAATTTACGCTTAAAACCGCGTCCGATGGTAGCAGCACGCTGCAACCCTGCTTCACTCTCGAAGATTTGAAA
AGCCTGGGAGTGAAGACTGACGAGTTTGATGCGTTAGACGCAGATGCGAAATGCGTTGACCTTTCGGCCATCCCCTCTGC
CAGCGCGCGTTTTGATGTCGGCCGCCAGCAACTCCAGCTTAGCATTGCGCAAAGCGCGCTGGGCCAGGTGCCGCAGGGGT
ATATACCGCCTGAGGAATTTAACGAAGGCATTAACGCGCTGTTGTTTAACTACAGCGTGAACGGCTCGCGCCAGAAAGCG
CTGACGCCGGATGCGCAGGACAGCCGCAATCTCTACGCCAACCTGCGTCCGGGCATTAATCTCGGCCCCTGGCGGCTGCG
CAACTACTCTACCTGGAGCCGCAACGCAGACCACTCGGGCACTCAGGAGAAGTTCTCCAGCGTCTATACCTACGCAGAGC
GCGACATTGTTGCTCTGAAAAGCGAGCTGACCCTGGGCCAGAGCAGCTCACCCGCGGATGTCTTCGACAGCATTCCTTTT
ACCGGTGCGCAGCTTGCCTCTGACGACGACATGCTGCCTGACAGCCTGCGCGGTTACGCCCCCGTGGTACATGGCATCGC
ACGCAGTAACGCCCAGGTGATTATTCGCCAGAACGGGTATCTCATCTCCCAGACTAACGTCGCGCCTGGCGCATTTGAAA
TTAACGATCTCTACCCGAGCGGTAGCAGTGGCGATCTCAACGTAACGGTGAAAGAGAGCGACGGCAGCGAACAGCATTTT
GTCGTGCCTTATGCTTCTGTTCCGGTTCTGCAACGCGAAGGACGGTTGAAATATAGCCTTACCGGCGGGCGCTACCGTTC
GTATGACGAAAGCGTTTTATCCACTGCGTTTATGCAAGGCACGGCCGTTTATGGCCTGCCACACGGGTTTACGCTTTACG
GCGGCATTCAGGCAAGCCAGCCCTACCATTCGCTGGCGCTGGGCGTCGGAGAAAACGTGGGGGATTTTGGCGCATTCTCG
CTGGATGTCACTGAAGCGAAAGCCACCTTATCGTCAGGTGAGACACAGAAAGGCCGTTCGTGGCGTGCCCGCTACAGCAA
GGATATCGCGCTGACGGGTGCCACGCTCTCGGTGGCGGGTTACCGCTTTAGCAGCGAGAACTATTACGCCATGCAGGATG
TTTTTGACACGATGCGCCGCGATAACCAGTGGGCAGACACGCTGCATCGCCGTAGCCGTGAAGAGCTAACGCTTGAGCAG
CCGCTGGGCGACGCGCTGGGTTCGCTGAACGCCAGCCTGATTCAGGAAAATTACTGGAACAGCAGCAAAACGATGTCTTC
ACTTAGCGTCGGTTACAACAATAGCTGGCACGATATCAGTTACGGGCTTAATTACAGCCTGAACCGTAATACCAGTGAAA
ATGGCTACGGCGAACCGGAGCATGAAAAGGACAGCGTCTTTTCTCTCACTCTCTCCATTCCGCTTGAACGCTGGTTGCCC
AATACCTGGGCAAGCTACAACCAAAGCCACAGCAAGCAGGGCACCACGCAGAACATCGGCCTTAACGGAACGGCGCTTTC
GGATAACAACCTCAACTGGAATATCCAGCAGAGCCAGGACAGTCAAGGCCAGATGCGTAACACCTCACTTAATGCCGATT
ACAAAGGCGCTTACGGCGAACTGAGCGCGGGTTACGGGCAGGATTTCAGCCAGCGGCAAATCCATTACGGCATTCAGGGC
GGGCTTATCGCCCACGCTAACGGCATCACACTTGGCCAGCCGATGGGTGAAACGGTGGCGCTGGTCGAAGCGCCGGGCGC
AAATGATACCGCTATTCACAACCAGACCGGCGTCAGAACCGATGGTCGTGGATACACCATTTTACCGTTTATCAGTCCCT
ACCGGCGCAATACCGTCGCGCTGGATACCGAAACGCTGCCCGCCGACGCTGATGTGACGCAGGCGGTACAGACCGTAACG
CCCACGCGCGGCGCGGTAGTACGGGCCCGTTTCGATACCCGAACCGGCGCGCGCGTACTGATGACGCTGCACCTGGCTGA
TGGTCGCCCGGTGCCGTTTGGCGCGACCGCAACCGCGGATGATACCGCAGAAGAATTTATCGTCGGCGAAAATGGCCAGG
TTTATCTGACCGGTCTTCAGCCGAAAGGCACGCTGCAGGTGAGCTGGGGCGCTAACGCCAGCCAGCGCTGCACCGCCGCA
TGGCGTCTTCCCACCGGGAATGGCGACAGCCAGTTTATTAACCTCTCCGCGCAATGCCTTTAA

Protein sequence :
MQARADDYFNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDIYINNERIDTREIEFTLKTASDGSSTLQPCFTLEDLK
SLGVKTDEFDALDADAKCVDLSAIPSASARFDVGRQQLQLSIAQSALGQVPQGYIPPEEFNEGINALLFNYSVNGSRQKA
LTPDAQDSRNLYANLRPGINLGPWRLRNYSTWSRNADHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFDSIPF
TGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEINDLYPSGSSGDLNVTVKESDGSEQHF
VVPYASVPVLQREGRLKYSLTGGRYRSYDESVLSTAFMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFS
LDVTEAKATLSSGETQKGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFDTMRRDNQWADTLHRRSREELTLEQ
PLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTSENGYGEPEHEKDSVFSLTLSIPLERWLP
NTWASYNQSHSKQGTTQNIGLNGTALSDNNLNWNIQQSQDSQGQMRNTSLNADYKGAYGELSAGYGQDFSQRQIHYGIQG
GLIAHANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTETLPADADVTQAVQTVT
PTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGATATADDTAEEFIVGENGQVYLTGLQPKGTLQVSWGANASQRCTAA
WRLPTGNGDSQFINLSAQCL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 4e-145 42
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 1e-145 42
safC NP_454907.1 outer-membrane fimbrial usher protein Not tested SPI-6 Protein 5e-136 41
afaC ADD91743.1 putative AfaC-VIII usher protein Not tested PAI-I AL862 Protein 2e-127 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CSSP291_12035 YP_007441279.1 hypothetical protein VFG0454 Protein 2e-147 43
CSSP291_12035 YP_007441279.1 hypothetical protein VFG1645 Protein 8e-146 42
CSSP291_12035 YP_007441279.1 hypothetical protein VFG0876 Protein 4e-146 42
CSSP291_12035 YP_007441279.1 hypothetical protein VFG0912 Protein 6e-147 42
CSSP291_12035 YP_007441279.1 hypothetical protein VFG0446 Protein 4e-138 41