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Name : CSSP291_01035 (CSSP291_01035) Accession : YP_007439096.1 Strain : Cronobacter sakazakii Sp291 Genome accession: NC_020260 Putative virulence/resistance : Virulence Product : outer membrane usher protein yfcU Function : - COG functional category : - COG ID : - EC number : - Position : 205982 - 208360 bp Length : 2379 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : GTGCTTGACGTAAAAGATAAGCAAAATATCGATCTTAGCCGTTTTTCAAAGCGCGGTTATATTATGCCGGGCGATTACGG ATTTAAAATTAAAGTTAACCAAAACGAACTGGAAGAGCAGACGGTCAGTGTTTTTGCTGCCGAAAATGATAAAAACCAGT CACTGGTTTGCTTTACGCCGGACCAGATCAAAAAATTTGGCTTTAAAGAAAAGTACCTCGGGCAATTTAAAGTCTGGCAT AACGGCCAGTGTGTCGATATCACGGCATTAAAAGGCGTTGAAGTCACACCGGACCTTGGCAACAGTATGCTGATGATAAG CGTACCCCAGGCTTATCTGGAATATACCTCCGATAACTGGGTGCCGCCGTCAATGTGGGATAACGGTATTCCCGGCGTTA TCGCGGATTACAACGTCAACGCCCAGACGCGCCATAACGAAGGGCGTGAAGGCGGTGACGATAACTCGGTGTCCGGCAAT GGTACGTTTGGCGCCAATATGGGGCCGTGGCGTCTGCGTGCAGACTGGCAGACCAACTATGACGATCGCTCAGGTAGCAG CGGTCAGAAAAAGTGGACGTGGAGCCGGTTCCAGATGTACCGCGCGCTGCCCAAAATGGGCGCGAAGCTGACTGTCGGCG AAGACTACATGAATTCAGATATGTTCGACAGCGTGCGTTACACCGGCGCAAGCGTCGTGTCTGACGACAATATGTTGCCG CCAAACCTGCGCGGTTACGCGCCGGAGGTGACCGGTGTAGCGAAGACTAACGCCAAAGTCACCATTTCGCAGCAAGGCCG TGTTATTTATGAAACGCAGGTCGCGGCAGGCCCGTTTGCCATTCAGGATCTCAATAACTCAGTCTCCGGGGCGTTGGATG TGCGTGTTCAGGAACAGGATGGCTCGGTACAGGAATATAAAGTCAATACGGCTTCTATTCCTTATCTGACAAGACCTGGC AGCCTGCGTTACAAAATGTATGCCGGCAGACCAAGCACTTACGATCACCATAGCGAAGGCAGTGGTTTTGGTTCGGGCGA ATTTTCATGGGGTATCAGCAACGGTTGGTCGCTTTATGGCGGTCTTGTGGCGAGCCGCAATTATCTGGCCACGGCGTTGG GTGTCGGCCGCGATCTGATGGCGCTGGGTGCGCTGGCGTTCGATATTACCCGCTCCGGCGCGAAGCTCGATAACGGTGAA GACCGGCATGGTCAGTCTTATCGCCTGAGTTATTCGAAGCGTTTCGATGACACAGGAAGTCAGGTGACATTTGCGGGTTA TCGCTTCTCCGAAAAAGACTTCATGAGCTTTAACGATTATCTGAATTACCGTGCAGATAACGGCAGCTTTATGCAGAGCA AAGAGATGTACACCATCTCCTTTAATCAGCAGTTTGAAAGTATCGGGCTTAGCGCTTATCTGAACTATTCACACCAGACT TACTGGAGTAACCCGGCGGAAGATCGCTATAGCCTGTCGCTGTCTCGCTATTTCGATATCGGGAAAATGAAAAATATCAG CGCGTCGCTGACGGCGTACCGTAACAAATTCAACGGCGAAAACGATGATGGTATGTATGTCTCCGTCTCTATGCCGATGG GCGATACCGGTACGCTGGGACTTAACTCATCCTATGACGCCGACAATAACAGCCATAGCCTGAGTTATTTCAACCGGCTG GATAACGGCGATAACTATCGTATTGCCGCAGGCGGCAGCAATGATGGCGGTAACCTGAGCGGTTATTACGATCACCCCGG AGACCTGGCAGAGGTCAGCGGCAACGTTGATTACCAGCACGGTCAATACAGTTCGGCCGGGTTATCACTGCGCGGCGGGA TGACGGCGACGGCGAAAGGCGCGGCATTACATCGCACTAACGTGATCGGCGGGACGCGCGTTCTGCTCGACACCGGTGAC GCCGCGGATATCCCGGTACAGGGTTATGCCAATGCGACGACCACCAACCATTTCGGTAAAGCGGTAATCACAGACGTGAG TGATTACAGCAAAAATAGCCTGAGCATTGATATTAACCATCTGCCAGAAGATGCCGAAGCGTCTGCCTCGGTGGTTCAGG CAACGCTCACCGAAGGCGCCATTGGCTATCGCAAATTTAATGTGATTTCAGGCCTGAAAGCGATGGCGATTATCCGCCTT GCGGATGGAACTTACCCGCCGTTCGGTGCCAGCGTGCTCAATGCGGAAAATCAGGAAATTGGCATCGTCAATGATGAGGG CCAGGCATACCTGAGCGGTTTGCAACCGGGCCACCAGTTAAGGGTTAGCTGGAATGGCAATGTGCAATGCGCCGTCACCC TGCCGAAAAATCTTCAGGGAACAAGCCAGAACGAAAATCTGCTGCTGCCGTGCCGCTAA Protein sequence : MLDVKDKQNIDLSRFSKRGYIMPGDYGFKIKVNQNELEEQTVSVFAAENDKNQSLVCFTPDQIKKFGFKEKYLGQFKVWH NGQCVDITALKGVEVTPDLGNSMLMISVPQAYLEYTSDNWVPPSMWDNGIPGVIADYNVNAQTRHNEGREGGDDNSVSGN GTFGANMGPWRLRADWQTNYDDRSGSSGQKKWTWSRFQMYRALPKMGAKLTVGEDYMNSDMFDSVRYTGASVVSDDNMLP PNLRGYAPEVTGVAKTNAKVTISQQGRVIYETQVAAGPFAIQDLNNSVSGALDVRVQEQDGSVQEYKVNTASIPYLTRPG SLRYKMYAGRPSTYDHHSEGSGFGSGEFSWGISNGWSLYGGLVASRNYLATALGVGRDLMALGALAFDITRSGAKLDNGE DRHGQSYRLSYSKRFDDTGSQVTFAGYRFSEKDFMSFNDYLNYRADNGSFMQSKEMYTISFNQQFESIGLSAYLNYSHQT YWSNPAEDRYSLSLSRYFDIGKMKNISASLTAYRNKFNGENDDGMYVSVSMPMGDTGTLGLNSSYDADNNSHSLSYFNRL DNGDNYRIAAGGSNDGGNLSGYYDHPGDLAEVSGNVDYQHGQYSSAGLSLRGGMTATAKGAALHRTNVIGGTRVLLDTGD AADIPVQGYANATTTNHFGKAVITDVSDYSKNSLSIDINHLPEDAEASASVVQATLTEGAIGYRKFNVISGLKAMAIIRL ADGTYPPFGASVLNAENQEIGIVNDEGQAYLSGLQPGHQLRVSWNGNVQCAVTLPKNLQGTSQNENLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-171 | 48 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-164 | 46 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-163 | 46 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 1e-163 | 46 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-164 | 46 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-164 | 46 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-164 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CSSP291_01035 | YP_007439096.1 | outer membrane usher protein yfcU | VFG1548 | Protein | 7e-165 | 46 |
| CSSP291_01035 | YP_007439096.1 | outer membrane usher protein yfcU | VFG0884 | Protein | 7e-165 | 46 |
| CSSP291_01035 | YP_007439096.1 | outer membrane usher protein yfcU | VFG0895 | Protein | 9e-165 | 46 |
