Gene Information

Name : rlmH (C663_3938)
Accession : YP_007428968.1
Strain : Bacillus subtilis XF-1
Genome accession: NC_020244
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3978992 - 3979471 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence :
GTGAATATCAATATTGTGACAATCGGAAAACTAAAAGAAAAATACCTCAAGCAAGGCATTGAAGAATACACCAAACGACT
TTCGGCCTACGCAAAAATCGACATCATCGAACTCCCGGACGAAAAAGCACCGGAAAACCTAAGCGACCAGGACATGAAAA
TCATAAAAGACAAAGAAGGCGACCGCATCCTATCCAAAATCAGCCCCGACGCCCACGTCATCGCCCTCGCCATCGAAGGA
AAAATGAAAACATCCGAAGAACTAGCCGATACAATAGATAAGCTGGCTACATATGGAAAAAGCAAAGTCACCTTCGTCAT
CGGCGGATCACTCGGATTGAGTGACGCGGTAATGAAGCGAGCGGATGAGAAGCTGTCTTTTTCAAAAATGACGTTTCCTC
ATCAGTTAATGCGTCTCATACTAGTCGAGCAGATTTATCGGGCTTTTCGGATTAATCGTGGGGAGCCTTATCATAAGTAG

Protein sequence :
MNINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVIALAIEG
KMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDAVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-48 62
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 5e-31 62
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-46 62
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-47 61
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-47 61
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-47 61
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-47 61
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-47 61
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-47 61
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-47 61
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-47 61
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-47 61
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-47 61
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-47 61
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-47 61
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-47 60
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-46 60
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-46 60
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-43 59