Gene Information

Name : SMWW4_v1c08950 (SMWW4_v1c08950)
Accession : YP_007404718.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Unknown
Product : putative site specific integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1003680 - 1004846 bp
Length : 1167 bp
Strand : +
Note : -

DNA sequence :
ATGCCTTTAAACGATATGCAGATTCGCCGCGCTAAGCCTGAAGCTAAAGCCTATACACTTGGAGATGGGCAAGGGCTGTC
ATTGCTTATAGAACCTAATGGAAGCAAGAGCTGGCGGTTCCGCTATCGCTATGCCGGTAAACCCAAAATGATCTCGCTTG
GCGTCTACCCAACGATCACATTAGCAGATGCTCGTTCTCGCCGTGATGAAGCTCGAAAACTTGTGGTAGAAGGAAAGAAT
CCTAGTGAGGTTCGAAAAGAGCAAAAGTTAGCTCTGCAAACAGAGTCAGAGAACGCTTTCGAAAAGATAGCCAGAGAGTG
GCACCAGCTTAAGTCTGCCAAATGGTCGGCAGGATATGCCTCAGATATCATGGAAGCGTTTAAGAACGACATTTTTCCTT
ATGTGGGTGCAAGGCCAGTAGGAGAGATTAAACCGTTAGAGCTATTGAACGTACTGCGTAAAATTGAGAAACGTGGCGCT
TTAGAGAAAATGCGCAAAGTGCGACAGCGCTGTTCGGAAGTTTTTCGCTATGCCATAGCTACCGGAAGAGCTGAGTTTAA
TCCTGCGGCAGATCTCTCCAGTGCTCTCGAAGTACATCAATCCAATCACTTCCCGTTCCTAAAAGCTAATGAAATACCCG
ATTTTCTGCGTGCTTTAGAGAGTTACACAGGGAGTCGGGTTGTCCAGATTGCTACTAAATTACTGATGATTACGGGGGTA
AGAACCATTGAACTACGTGCAGCATCATGGTCGGAATTTGATCTAGATAATGCTATTTGGGAAATTCCTGCTGAAAGGAT
GAAAATGCGTAGGCCGCATCTTGTGCCCTTATCGACTCAGGCGTTACATTTACTCAATGAACTCGTGGTAATGACAGGGA
ACTATCGTTATGTTTTCCCGGGTCGGAATGATCCTAACAAACCTATGAGTGAAGCGAGTATAAATCAAGTGATTAAACGT
ATCGGTTATGGTGGGAGAGTGACTGGTCATGGTTTCAGGCATTCATTGTCTACGATTTTACATGAACAGGGCTATGAGTC
TGCGTGGATAGAGACGCAGTTAGCACATGTTGATAAAAATAGTATTCGTGGTGCTTACAACCATGCACAATATATTTCTC
AAAGGGGGTTAATGCTTCAATGGTATTCCGATTTTATCATTAAATAA

Protein sequence :
MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTITLADARSRRDEARKLVVEGKN
PSEVRKEQKLALQTESENAFEKIAREWHQLKSAKWSAGYASDIMEAFKNDIFPYVGARPVGEIKPLELLNVLRKIEKRGA
LEKMRKVRQRCSEVFRYAIATGRAEFNPAADLSSALEVHQSNHFPFLKANEIPDFLRALESYTGSRVVQIATKLLMITGV
RTIELRAASWSEFDLDNAIWEIPAERMKMRRPHLVPLSTQALHLLNELVVMTGNYRYVFPGRNDPNKPMSEASINQVIKR
IGYGGRVTGHGFRHSLSTILHEQGYESAWIETQLAHVDKNSIRGAYNHAQYISQRGLMLQWYSDFIIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-126 65
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-125 61
int ACU09430.1 integrase Not tested LEE Protein 9e-125 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-124 61
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-124 61
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-125 61
int AAD44730.1 Int Not tested SHI-2 Protein 4e-124 61
int CAC39282.1 integrase Not tested LPA Protein 1e-124 61
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-124 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-124 61
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-124 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-121 59
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-74 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-75 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-75 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 8e-75 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 8e-75 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-74 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-74 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-74 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-74 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-74 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 8e-75 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-75 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-75 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c08950 YP_007404718.1 putative site specific integrase VFG0783 Protein 5e-125 61
SMWW4_v1c08950 YP_007404718.1 putative site specific integrase VFG0598 Protein 3e-124 61
SMWW4_v1c08950 YP_007404718.1 putative site specific integrase VFG1693 Protein 6e-75 41