Gene Information

Name : SMWW4_v1c00920 (SMWW4_v1c00920)
Accession : YP_007403919.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 99538 - 100713 bp
Length : 1176 bp
Strand : +
Note : -

DNA sequence :
ATGCTCCTAACTGACATACAAATTCGACGTTCCAAGCCGCAGGAAAAGCCCTACACCCTCAACGATGGCCAAGGCCTGTC
TCTCCTTATCAACACTGACGGGAGTAAAGGTTGGCGTTTTCGCTATCGCTATGCCGGAAAAGCCAAGCTAATGTCCTTTG
GTACCTACCCTTTGGTAACGCTGGCCGACGCGCGAGAAAAGCGCGGAGAGGCCCGTAAGCAAGTTGCTAATGGCATTGAC
CCTGTAGCCGAGAAAAAGGCGCAAAAGCTCGCTCGGAAGCTTTCTGTTGAGAATTCCTTTGAAGCTATTAGCCGCGAGTG
GCACACGAACAAGGCTAACCGGTGGACTCTGGCCTACAGGGAAGAAATCATGCGTACCTTTGAGCAGGATGTGTTTCCGT
ACATTGGTCAACGTCCGATTGCAGAAATTAAGCCCTTGGAGCTGCTGGAAGTGCTACGGCGCATTGAGAAGCGTGGGGCA
TTGGAAAAGACCCGTAAGGTACGCCAGCGCTGCGGAGAGGTATTCCGCTACGCCATTATTACCGGTAGGGCAGAATATAA
CCCAGCCCCAGATCTGGCCAGCGCATTAGCCGTTCCCAAGCAAAAGCATCACCCGTTCCTTTCGGCCGAGGAACTGCCTT
ATTTTGTTAAGGATTTGGAGGGATATACCGGCAGCATCATCACCAAGAATGCAGCGAAGATCGTTATGCTGACCGGCGTC
CGCACGCAAGAAATGCGCTTTGCTACATGGGAGGAAATTGATTTTGAACGGGGTATCTGGGAGATTCCCGCCGAGCGCAT
GAAAATGCGCCGCCCGCACATTGTACCGCTCTCTACTCAGGCGGTTGAATTGCTTAAACAGCTACAACCGATCACAGGTC
ACTATCCTTACATTTTCATTGGACGAAACAATCGTAGGAAACCCATAAGCAAAGAAAGCGTGAATCAGGTAATAGAGCTG
CTTGGGTATAAGGGGCGAGCTACCGGTCACGGTTTCAGGCATACGATGTCTACTATTTTGCATGAGCAAGGGTTTGACTC
TGCCTGGATAGAGATGCAGCTTGCCCACGTGGACAAGAACGGTATTCGCGGTACCTACAACCATGCGCAGTACCTTGAGA
AACGCCGTGTGATGCTGCAATGGTACGCCGATTTTATCTCGGGCCTTGCTCGCTAG

Protein sequence :
MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVTLADAREKRGEARKQVANGID
PVAEKKAQKLARKLSVENSFEAISREWHTNKANRWTLAYREEIMRTFEQDVFPYIGQRPIAEIKPLELLEVLRRIEKRGA
LEKTRKVRQRCGEVFRYAIITGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTGV
RTQEMRFATWEEIDFERGIWEIPAERMKMRRPHIVPLSTQAVELLKQLQPITGHYPYIFIGRNNRRKPISKESVNQVIEL
LGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKNGIRGTYNHAQYLEKRRVMLQWYADFISGLAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 9e-146 73
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-146 73
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-144 72
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-144 72
int ACU09430.1 integrase Not tested LEE Protein 1e-144 72
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-144 72
int AAD44730.1 Int Not tested SHI-2 Protein 7e-144 72
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-144 72
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-143 72
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-143 72
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-115 59
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-115 55
intA AAB00935.1 integrase A Not tested vap locus Protein 7e-60 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-77 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-77 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-78 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-78 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-78 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-78 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 6e-78 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-78 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-78 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-78 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-79 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-79 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-77 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-77 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-77 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-77 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-77 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-77 41
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 6e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c00920 YP_007403919.1 phage integrase VFG0783 Protein 6e-145 72
SMWW4_v1c00920 YP_007403919.1 phage integrase VFG0598 Protein 4e-144 72
SMWW4_v1c00920 YP_007403919.1 phage integrase VFG0626 Protein 1e-78 41
SMWW4_v1c00920 YP_007403919.1 phage integrase VFG1693 Protein 2e-78 41