|
Name : SMWW4_v1c38080 (SMWW4_v1c38080) Accession : YP_007407614.1 Strain : Serratia marcescens WW4 Genome accession: NC_020211 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4110612 - 4113125 bp Length : 2514 bp Strand : - Note : - DNA sequence : ATGGTGCGTATCAATACGCTGGGATTATGCATCGCCCTGGCGCTCGGCGCCCTTCCGGCACAGGTGTATGCTGCCGACGA GATCCAGTTCAACACCGACGTGCTGGACGTGCATGACCGCAAGAACATCGATCTGAGCCAGTTTTCACGTGGCGGTTACA TTATGCCCGGCACCTACGGCATGGTGGTGCACATCAACAAGAACGATTTGCCGGAGCAGCAAATCCCGTTCTATCCGCCG CAGGACGACCCGAACGGCAGCCGCGCCTGCATCAACAAGGCGCTGGTGGCGCAACTGGGCCTTAAAGAGGGCGTGATGAA GGATTTGCGCTGGTGGCACCAGGGCGAGTGCCTGGACGAGAGCAGCGTGGCGGGCATGGAGATGCGCGGCGACCTGGCCA CCTCGTCGCTGTACCTGAACATCCCGCAGGCGTTTCTCGAGTACACCGCCGAGAACTGGGACCCGCCGTCGCGCTGGGAC GAGGGCATTCCTGGTCTGCTGTTCGACTATAACCTCAACGCACAGAGCCAGCACCAGCAGCGCAGCGGTACCCGCAGTTA CAACCTGAGCGGCAACGGCACCGCCGGCGCCAACCTTGGCACCTGGCGCCTGCGGGCCGACTGGCAGGGCAGCCTCAGCC ACCAGACCGGCAGCGGGCAGCCGACCGACACGCGGCTGGACTGGAGCCGCTACTACGCCTACCGCGCCATTCCGGCGCTG CGCTCGAAGCTGACGCTGGGCGAGAGCTACCTGGACTCCGGCATGTTCGACAGCTTCCGCTTTGCCGGCGCCAGCCTGGT GTCGGATGACAACATGCTGCCGCCCAACCTGCGCGGCTATGCGCCGGAGGTGGTCGGCGTGGCGAAGACTAACGCCAAAG TCATCATCAGCCAGCAGGGGCGGGTGCTATATGAGACCAGCGTGGCGGCCGGGCCGTTCCGCATTCAGGACATCAACGAC GCGGTGAGCGGCGAGCTTAACGTGCGGGTGGAGGAGCAGGACGGCACGGTGCAGGAGTTCGTGATGAACACCGCCAGCAT TCCGTACCTGACGCGGCCGGGCTCGGTGCGTTTCAAGCTGGCGGCGGGCAAGCCGTCGGACTGGGAGCACCACGCGCGCG GGCCGCTGTTCGGCACCGGTGAGTTCTCCTGGGGGGTGAGCAACGGCTGGTCGCTGTACGGCGGTGCGCTGGCGGGCGGT GACTATAACGCGCTGTCGCTGGGGCTGGGCCGTGACCTGATGGCGTTCGGGGCGCTGTCATTCGACGCTACCCAGTCGCG GGCGCGGTTGCCGCAGGAGGAGGGGGCGCTGAGCGGCGGTTCGTACCGGCTTAGCTATTCGAAGAGCTTCGACGAGTACG ACAGCCAGGTGACCTTTGCCGGCTACCGCTTCTCGGAGCAGGATTTCATGAGCATGAGCGAGTACCTGGACGCGCGCTAC TACGGCAACCGCAACGGCAGCGGCAAGGAGATGTACACCATTACCTTCAACAAGCACTTCCGTGACTGGGGGCTGAGCAG CTACCTCAACTACAGCCATGAGACCTACTGGGACAGGCCGGCCAACGATCGCTACAACCTGACGCTGTCGCGCTATTTCG ATATCGGCCGGTTCCGCAACCTGAGCCTGTCGCTGTCGGCGTACCGCAACCAGTACAACGGAATGAAGGACGACGGGGCC TACTTGTCGCTGTCGATGCCGTGGGGTGAGCGCTCGACGCTGAGCTACAACACCACGGTGAACCGCAACGATACCACGAA CCGGGTGAGCTATTACGACCGGCTTGACGAGCGCAGCAACTACCAGCTGAGTGCCGGCACATCGCGCAGCGGCGCCAACG CCAGCGGCTATTACAGCCGCGAGGGCGATATCGCGCGGCTGAGCGCCAACGCCAGCTACCAGGAAGGGCGTTACAGCGCG GTGGGGCTGAGCGCCCAGGGCGGGATGACGCTGACGGCGGAGGGCGGGGCGTTGCACCGCAGCGGCATGGCGGGCGGCAC GCGGATGCTGATCGACACCCAGGGGGTGGCGGACGTGCCGGTGCGCGGCTACGGGCGCACCAGCCGCACCAACGTCTGGG GCAAGGCGGTGATCGGCGACGTGAACAGCTATTACCGCAACAAGGCCAGCATCGATCTGAACCAGCTGGGCGACAACGCT GAGGCGACCACATCGGTGGTGCAGGCGACGCTGACCGAGGGGGCCATCGGCTACCGGCAGTTTGGCGTGATAGCGGGGGC CAAGGCGATGGCGGTGATCAAGCTGGCGGACGGCAGTGAACCGCCGTTCGGCGCCACGGTGCTGAACGCCCGCAAGCAGG AGACCGGCATCGTCAACGATGGCGGCAGCGTCTATCTCAGCGGCATCAACGCCGGTGAGGCGATGACGGTGCGCTGGAAC GGGGCGGCGCAGTGTGAAGTGCGCCTGCCGAGCCCGCTGCCGGCGGAGATGTTGATGAATACGCTGTTGTTGCCCTGTGA TAAAACGGGGCATGCGGTGAAAAAATCAAGTTAG Protein sequence : MVRINTLGLCIALALGALPAQVYAADEIQFNTDVLDVHDRKNIDLSQFSRGGYIMPGTYGMVVHINKNDLPEQQIPFYPP QDDPNGSRACINKALVAQLGLKEGVMKDLRWWHQGECLDESSVAGMEMRGDLATSSLYLNIPQAFLEYTAENWDPPSRWD EGIPGLLFDYNLNAQSQHQQRSGTRSYNLSGNGTAGANLGTWRLRADWQGSLSHQTGSGQPTDTRLDWSRYYAYRAIPAL RSKLTLGESYLDSGMFDSFRFAGASLVSDDNMLPPNLRGYAPEVVGVAKTNAKVIISQQGRVLYETSVAAGPFRIQDIND AVSGELNVRVEEQDGTVQEFVMNTASIPYLTRPGSVRFKLAAGKPSDWEHHARGPLFGTGEFSWGVSNGWSLYGGALAGG DYNALSLGLGRDLMAFGALSFDATQSRARLPQEEGALSGGSYRLSYSKSFDEYDSQVTFAGYRFSEQDFMSMSEYLDARY YGNRNGSGKEMYTITFNKHFRDWGLSSYLNYSHETYWDRPANDRYNLTLSRYFDIGRFRNLSLSLSAYRNQYNGMKDDGA YLSLSMPWGERSTLSYNTTVNRNDTTNRVSYYDRLDERSNYQLSAGTSRSGANASGYYSREGDIARLSANASYQEGRYSA VGLSAQGGMTLTAEGGALHRSGMAGGTRMLIDTQGVADVPVRGYGRTSRTNVWGKAVIGDVNSYYRNKASIDLNQLGDNA EATTSVVQATLTEGAIGYRQFGVIAGAKAMAVIKLADGSEPPFGATVLNARKQETGIVNDGGSVYLSGINAGEAMTVRWN GAAQCEVRLPSPLPAEMLMNTLLLPCDKTGHAVKKSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 52 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 6e-173 | 48 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-172 | 48 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 8e-173 | 48 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 6e-173 | 48 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-171 | 47 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 3e-171 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SMWW4_v1c38080 | YP_007407614.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 4e-173 | 48 |
| SMWW4_v1c38080 | YP_007407614.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 5e-173 | 48 |
| SMWW4_v1c38080 | YP_007407614.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 3e-173 | 48 |
