Gene Information

Name : fliP (SMWW4_v1c29580)
Accession : YP_007406771.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3197767 - 3198528 bp
Length : 762 bp
Strand : +
Note : -

DNA sequence : 
ATGACCTCGACTCTTCATACCCTCGTCCGCCGTCCGGCGGTTTGGCTCCCTGCCGCCCTGCTGCTGATCAGCCCGGCGGC
TTTTGCACAACTGCCGGGGCTGATCAGCCAGCCGCTGGCCAACGGCGGCCAAAGCTGGTCGCTGCCGGTGCAGACGCTGG
TGCTGTTGACCTCGCTGACCTTCTTGCCCGCCATGCTGCTGATGATGACCAGCTTCACCCGCATCATCATCGTGCTCGGC
CTGCTGCGCAACGCGCTGGGCACGCCGTCGGCGCCGCCGAACCAGGTGATGCTGGGGCTGGCGCTGTTCCTGACCTTCTT
CATCATGTCGCCGGTGTTCGACAAGGTTTATCAGGACGCCTATCTGCCATTCAGCCAGGACAAAATCGGGCTGGAAGTCG
CGCTGGATAAAGGCGCGCAGCCGCTGCGCGAATTCATGCTGCGGCAAACGCGCGAAACCGATCTGGCGCTGTACGCCAGA
CTGGCCAATCAGCCGCCGCTGGCCGGCCCGGAAGCGGTGCCGATGCGCATCCTGCTGCCCGCCTACGTCACCAGCGAACT
GAAAACCGCCTTCCAGATCGGCTTTACGGTGTTCATTCCGTTCCTGATTATCGACCTGGTGGTCGCCAGCGTGCTGATGG
CGCTGGGGATGATGATGGTGCCGCCGGCCACCATCTCGCTGCCGTTCAAGCTGATGCTGTTCGTGCTGGTCGATGGCTGG
CAGCTGCTGCTCGGCTCGCTGGCGCAGAGCTTCTATTCGTAA

Protein sequence : 
MTSTLHTLVRRPAVWLPAALLLISPAAFAQLPGLISQPLANGGQSWSLPVQTLVLLTSLTFLPAMLLMMTSFTRIIIVLG
LLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKIGLEVALDKGAQPLREFMLRQTRETDLALYAR
LANQPPLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGW
QLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-26 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-26 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-26 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-28 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-20 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-20 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-21 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-21 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-31 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-31 42
escR AAC31528.1 L0049 Virulence LEE Protein 9e-31 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-31 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-30 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-29 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-31 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-31 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-28 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-28 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 7e-31 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-31 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-30 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
escR AAC38369.1 EscR Virulence LEE Protein 7e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-96 93
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG2494 Protein 6e-75 69
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-62 60
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-61 56
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-31 43
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG0827 Protein 5e-31 42
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG0394 Protein 3e-30 42
fliP YP_007406771.1 flagellar biosynthetic protein FliP VFG0715 Protein 4e-30 41