Gene Information

Name : SMWW4_v1c21580 (SMWW4_v1c21580)
Accession : YP_007405978.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmic protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2334856 - 2335800 bp
Length : 945 bp
Strand : -
Note : -

DNA sequence : 
ATGCCATTGATAAGTTGCGCTTTTCGTCGCAGTCGCCCTTCCCGCTCTGCTGCATTGTTACGCCCTTTCACGCTCGCCTG
CCTGCTGCTCGGCGCCGCCTTGGTCAGCCAAAACGCGCTGGCGGAAAAAAAGCTGCGCGTGGTGACCACCTTCACCATCA
TTCAGGATATCGCCCAGAACGTGGCCGGTGACGCCGCCGTGGTGGAATCCATCACCAAGCCGGGCGCCGAGATCCACGAC
TATCAACCGACTCCGCGCGACATCGTCAAGGCACAGCACGCCGACCTGATCCTGTGGAACGGCATGAACCTGGAGCGCTG
GTTCCAGCGTTTCTTCGAAAACATCAAACAGGTGCCGGCGGCGGTAGTCACCGAAGGCATTACCCCGCTGCCGATCCGCG
AAGGGCCCTATAACGGCAACCCGAACCCGCATGCCTGGATGTCGCCAAGCAACGCGCTGGTGTATATCGAGAATATCCGC
AAGGCGCTGGTGGAGCACGATCCGGCCAATGCGGAAACCTATAACCGCAATGCCAAGGCCTACGCAGAGAAAATCGGCGC
GCTGGACGCCCCGCTGCGCGAACGCCTGGCGCGCATTCCGGCCGCACAGCGCTGGCTGGTGACCAGTGAAGGTGCCTTCA
GCTACCTGGCGCAGGACTATCAGTTGAAAGAGGTTTATCTGTGGCCGATCAACGCCGATGAGCAAGGCTCGCCGCAGCAG
GTGCGCCGGGTGATCGACGCCGTGCGCGCCCACCATATTCCGGTGGTGTTCAGCGAGAGCACCATTTCCGACAAGCCGGC
CAGGCAGGTGGCGAAAGAAACCGGCGCCAAATACGGCGGCGTGCTGTACGTGGACTCGCTGTCCACCCGCGATGGCCCGG
TGCCGACCTACATCGACCTGCTTAACACCACCGTGCAAACCATCGCCAAAGGATTCGATCAATGA

Protein sequence : 
MPLISCAFRRSRPSRSAALLRPFTLACLLLGAALVSQNALAEKKLRVVTTFTIIQDIAQNVAGDAAVVESITKPGAEIHD
YQPTPRDIVKAQHADLILWNGMNLERWFQRFFENIKQVPAAVVTEGITPLPIREGPYNGNPNPHAWMSPSNALVYIENIR
KALVEHDPANAETYNRNAKAYAEKIGALDAPLRERLARIPAAQRWLVTSEGAFSYLAQDYQLKEVYLWPINADEQGSPQQ
VRRVIDAVRAHHIPVVFSESTISDKPARQVAKETGAKYGGVLYVDSLSTRDGPVPTYIDLLNTTVQTIAKGFDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-91 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-91 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-91 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-92 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-91 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c21580 YP_007405978.1 metal ion ABC transporter periplasmic protein BAC0439 Protein 1e-112 81
SMWW4_v1c21580 YP_007405978.1 metal ion ABC transporter periplasmic protein BAC0349 Protein 8e-92 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c21580 YP_007405978.1 metal ion ABC transporter periplasmic protein VFG0525 Protein 7e-92 64