Gene Information

Name : SMWW4_v1c21550 (SMWW4_v1c21550)
Accession : YP_007405975.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2332255 - 2333109 bp
Length : 855 bp
Strand : -
Note : -

DNA sequence : 
ATGGACACCCTGTATCAACTGCTCAGCGAACCCTTCGCCTACCCGTTCATGCAGCGGGCGATCGTCGCCGCCATCGTTAC
CGGCGTGGTGTGCGCCGTGCTCTCCTGCTATCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGACGCCATCTCGCACGCCG
TCTTGCCCGGCATCGTAGTGGCGTTCGTGGTCGGCATCCCGCTGGCGATCGGCGCCTTCCTCTCCGGCATCTTCTGCGCG
GTAGCCACCGGCTACCTGAAAGAGAACAGCCGGGTGAAAGAGGACACGGTGATGGGCATCGTCTTTTCCGGCATGTTCGC
CTTCGGCTTGGTGCTGTTCTCGCGCATCGATACCGACCAGCACCTGAGCCACATTCTGTTCGGCAACATGCTGGGCATTA
CCGACGGCGAACTGAAGCAAACCCTGCTGATCGCCGGCATCACCCTGGCGGTGGTGCTGCTCAAGCGCAAAGACTTCATG
CTGTACTGCTTCGATCCGCACCATGCGCGGGTGATTGGCCTGCCGGTCAAGCTGTTGCACTACGGGTTGCTGTGCCTGCT
GGCGATGACCATCGTCGCCTCACTGCAGGCCGTGGGGGTGATCCTGGTGATCGCCATGCTGATCGCCCCCGGCATCATCG
CCTTTATGCTGTGCCGCCGCTTCGACCGCATGCTGATGGTGGCGACGGTGGTGTCGGTGTTCTCCTGCGTGCTCGGCACC
CTGATCAGCTTCCACATCGACGGCGCCACCGGCCCCTGCATCGTCATCGTACAGGCCGCGCTGTTCGTGATCGCCTTGTT
GTACAGCAAGCTGCGTCCGTTACAGGGTAACCAAAACGCCCCCATTGGCAGTTAA

Protein sequence : 
MDTLYQLLSEPFAYPFMQRAIVAAIVTGVVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFVVGIPLAIGAFLSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRIDTDQHLSHILFGNMLGITDGELKQTLLIAGITLAVVLLKRKDFM
LYCFDPHHARVIGLPVKLLHYGLLCLLAMTIVASLQAVGVILVIAMLIAPGIIAFMLCRRFDRMLMVATVVSVFSCVLGT
LISFHIDGATGPCIVIVQAALFVIALLYSKLRPLQGNQNAPIGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-71 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-71 55
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-71 55
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-72 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-72 55
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-52 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-52 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-52 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-52 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c21550 YP_007405975.1 ABC transporter BAC0442 Protein 2e-113 85
SMWW4_v1c21550 YP_007405975.1 ABC transporter BAC0352 Protein 3e-72 55
SMWW4_v1c21550 YP_007405975.1 ABC transporter BAC0351 Protein 1e-52 41
SMWW4_v1c21550 YP_007405975.1 ABC transporter BAC0441 Protein 8e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMWW4_v1c21550 YP_007405975.1 ABC transporter VFG0528 Protein 3e-72 55
SMWW4_v1c21550 YP_007405975.1 ABC transporter VFG0527 Protein 1e-52 41