Gene Information

Name : mrfD3 (SMWW4_v1c16200)
Accession : YP_007405443.1
Strain : Serratia marcescens WW4
Genome accession: NC_020211
Putative virulence/resistance : Virulence
Product : fimbrial chaperone MrfD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1783341 - 1784105 bp
Length : 765 bp
Strand : +
Note : -

DNA sequence :
ATGATGAATCTGACTATGACCAGAAAGACCGTTTCCCTTGTGGGCCCGCTCGCCGCCGCATTGACGCTCGGCGCGGTCGG
CCTGCCCGCTCATGCGGCTATCGCGCTGGATCGCACGCGCGTGATTTTCGACGGCGACCTGAAAACGGTCAGTCTCAACA
TCAGTAACCAGAACAAACAGTTGCCGTATTTGGCGCAGGGATGGATCGAAGACGATCGCGGCAACAAGATCCAAAGCCCC
TTCACCGTGCTGCCGCCGGTGCAGCGGGTGGAGCCGGGCAAACCGAGCCAGGTGAAGATCCAGTCGCTGCCGGCCGCGCG
TCAGCTGCCGCAGGACCGGGAGACGCTGTATTACTTCAACCTGCGGGAAATACCGCCGCGGAGCAATAAGCCGAACACGC
TGCAGATAGCGTTGCAGACCCGCATCAAAATGTTTTATCGCCCGGCGGCGCTCGCCCCGAAGAAGAACGCGGCGCCGTGG
CAGGAGCAGCTGACGCTGACCCGGCAGGGTGACAAGTATGTGGTGAACAACCCGACCCCTTATTACGTGACGATCGTTGA
GGCGAGCGCCGGCAAGGGCGGCAAAGGGGCGGCCGGCTTTGAACCGTTGATGGTGGCGCCGAAGGCCAGCGCCCCGCTGA
ACGTGCCCGCCGCGAGCCTCGGCAACGGTCCGTCGCTGGCGTACATCAACGATTACGGCGGGCGGCCGCAGTTGAACTTC
CGCTGCGCCGGCAGTGCCTGCCAGGTCGTGCCGGTCGCCAAATGA

Protein sequence :
MMNLTMTRKTVSLVGPLAAALTLGAVGLPAHAAIALDRTRVIFDGDLKTVSLNISNQNKQLPYLAQGWIEDDRGNKIQSP
FTVLPPVQRVEPGKPSQVKIQSLPAARQLPQDRETLYYFNLREIPPRSNKPNTLQIALQTRIKMFYRPAALAPKKNAAPW
QEQLTLTRQGDKYVVNNPTPYYVTIVEASAGKGGKGAAGFEPLMVAPKASAPLNVPAASLGNGPSLAYINDYGGRPQLNF
RCAGSACQVVPVAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 5e-53 51
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 8e-55 51
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-52 51
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 9e-53 51
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 9e-53 51
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 7e-53 51
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 7e-53 51
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-46 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mrfD3 YP_007405443.1 fimbrial chaperone MrfD VFG1547 Protein 3e-53 51
mrfD3 YP_007405443.1 fimbrial chaperone MrfD VFG0896 Protein 4e-53 51
mrfD3 YP_007405443.1 fimbrial chaperone MrfD VFG0885 Protein 8e-47 50