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Name : SMWW4_v1c01130 (SMWW4_v1c01130) Accession : YP_007403940.1 Strain : Serratia marcescens WW4 Genome accession: NC_020211 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 116754 - 119345 bp Length : 2592 bp Strand : + Note : - DNA sequence : ATGGAGTTTTCTTCGCTTGGAAAAATTGCACCTCTGCATTCGTTAGGATTGTTTATTTCCCTTGCGTTGGGTACTTCAGT GATAAGCGCCCATGCTGCCGATAATATTCTGTTCAATACCGATGTGCTGGATGTCAACGATCGGAAAAACATCGATCTGA GCCAATTCTCGCGCAGTGGCTACATTATGCCGGGGACCTACGGCATGGTGGTGCACGTTAATAAGAATGACTTGCCGGAG CAACAGATTGCATTTTATGCGCCGGAGGGCGACCCAAATGGCAGTCGTGCCTGCCTCAGCCCTGAGTTGGTCGAGCAACT GGGATTCAAGCCCGGCGTGCTGAAAGACCTGACCTGGTGGCGAGAGGGAGAATGTCTGAACGAGACCAGCGTACAGGGAA TGGAAGTGCGTGGCGATTTGCCCACATCCTCTCTTTACCTGAGCATTCCTCAGGCTTATCTGGAGTACAGCGACGAGAAC TGGGATCCGCCGTCTCGCTGGGATGAGGGTATTCCAGGGTTGCTCTTCGATTACAACGTCAATGCGCGTAGCCAGCATCA GCAGCGGGACGGATCGCGCAGTTATAGCCTCAGCGGCAACGGTACGGCGGGCGCCAACCTGGGCGCATGGCGTCTGCGTG CCGATTGGCAGGCGAATCTTGACCATCAAACGGGGAGCGGGCAACCGACCCATAAACAGCTGGACTGGAGCCGGTATTAC GCCTATCGGGCAATACCGGCGCTGCGCTCGAAGCTGATGCTGGGTGAAAACTACCTGGACTCAGGCATGTTCGACAGCTT CCGTTTTACGGGGGCGAGCCTGGTGTCGGACGACAGCATGCTGCCCCCTAATCTGCGCGGTTATGCGCCGGAAGTGGTGG GAGTAGCGAAAACCAACGCCAAAGTCACCATCAGTCAACAAGGGCGTGTGCTGTCCGAGACCACGGTGGCGGCCGGACCA TTCCGCATTCAGGACATCAACGATGCGATCAGCGGCGAGCTGAACGTGCGGGTGGAAGAGCAGGACGGTGGCGTGCAGGA GTTCGTGGTGAATACCGCGAACATCCCGTACCTGACGCGGCCAGGCTCGGTACGCTTCAAGCTGGCGACGGGTAAACCGT CAGACTGGCAGCACCATTCGCGCGGCCCGCTGTTCGGCACCGGCGAGTTTTCCTGGGGGGTGAGCAACGGATGGTCGCTG TACGGCGGTGCGCTGGCGGGCGGCGACTACAACGCGTTGTCACTGGGTATCGGCCGTGACCTGATGGCGTTGGGGGCGCT GTCGTTTGATGCCACCCAGTCGCGGGCGCGGTTGCCACAGGAAGACGGCACGCTCAGCGGCGGTTCCTATCGGCTCAGTT ACTCAAAGAACTTCGACGAATACGACAGCCAGGTGACCTTTGCCGGCTATCGCTTCTCGGAACAGGACTTTATGAGCATG AGCGAGTATCTGGACGCGCGTTATTACGGCACCCGAACGGGGAATGGCAAGGAGATGTACACCATTACCTTCAACAAGCA CTTCCGCGACTGGGGACTGAGTACCTATCTCAATTACAGCCACGAGACGTATTGGGACCGGCCGGCCAACGACCGTTACA ACCTGACGCTGTCGCGTTATTTCGACGTGGGCCGGTTCCGCAACCTGAGCCTGTCGCTGTCGGCGTACCGTAATGAATAC AACGGGACGAAAGACGATGGGGCCTACCTTTCACTGTCGATGCCGTGGGGGGATAACTCAACGGTGAGCTACAACACCAC GGTGAACCGCGACGACACCACACATCAGGTGGGGTATTACGACCGAATTGATGAGCACAACAACTACCAGTTGCGGGCCG GCAGTTCGCGCAGCGGGGTGAATGTGAACGGGTATTACAACCATGAAGGTGATAAGGCGCGCATGAGTGCTAACGCCAGT TATCAGGAAAACCGTTACAGCGCCTTCGGGATGTCGATGCAGGGCGGCATGACGATGACGGCGAACGGTGGGGCGCTGCA TCGGGCCGGGATGCCGGGCGGCACCCGCATGCTGATTGACACGCAGGGGGTGGCGGACGTGCCGGTGCGGGGCTATGGCA GCACCACCAACACCAATGCCTGGGGCAAGGCGGTCATCGGGGACGTGAACAGCTATTACCGCAACAGGGCGAGTATCGAT GTGAACAAACTCGGTGATAACGCCGAAGCCACGAAGTCGGTGGTGCAGGCCACGCTCACCGAAGGCGCTATCGGTTACCG CCAGTTCGACGTGATTGCCGGCGAGAAGGCGATGGCGGTCATCAAATTGGCCGACGGCAGTGAACCCCCATTCGGCGCCA CGGTAATGAACGCCCGCAAGCAGGAGACGGGTATCGTCAATGACGGCGGCAGTGTTTACCTGAGCGGCATTAACGCCGGC GATGCCATGACGGTTCACTGGAACGGCGGCGCGCAGTGTGAGGTGCGAATGCCAACGCCGCTGCCGGCAGACATGCTGAT GAATACGCTGCTGTTGCCTTGTCATCCGCTGGGGGCGCGCACAGAGCCTGACGCGCGGACGCAGGGTGTGCCAGTGCCAG TGGTTGCGCCAGAGCCGGAACCGGCTTCGTAA Protein sequence : MEFSSLGKIAPLHSLGLFISLALGTSVISAHAADNILFNTDVLDVNDRKNIDLSQFSRSGYIMPGTYGMVVHVNKNDLPE QQIAFYAPEGDPNGSRACLSPELVEQLGFKPGVLKDLTWWREGECLNETSVQGMEVRGDLPTSSLYLSIPQAYLEYSDEN WDPPSRWDEGIPGLLFDYNVNARSQHQQRDGSRSYSLSGNGTAGANLGAWRLRADWQANLDHQTGSGQPTHKQLDWSRYY AYRAIPALRSKLMLGENYLDSGMFDSFRFTGASLVSDDSMLPPNLRGYAPEVVGVAKTNAKVTISQQGRVLSETTVAAGP FRIQDINDAISGELNVRVEEQDGGVQEFVVNTANIPYLTRPGSVRFKLATGKPSDWQHHSRGPLFGTGEFSWGVSNGWSL YGGALAGGDYNALSLGIGRDLMALGALSFDATQSRARLPQEDGTLSGGSYRLSYSKNFDEYDSQVTFAGYRFSEQDFMSM SEYLDARYYGTRTGNGKEMYTITFNKHFRDWGLSTYLNYSHETYWDRPANDRYNLTLSRYFDVGRFRNLSLSLSAYRNEY NGTKDDGAYLSLSMPWGDNSTVSYNTTVNRDDTTHQVGYYDRIDEHNNYQLRAGSSRSGVNVNGYYNHEGDKARMSANAS YQENRYSAFGMSMQGGMTMTANGGALHRAGMPGGTRMLIDTQGVADVPVRGYGSTTNTNAWGKAVIGDVNSYYRNRASID VNKLGDNAEATKSVVQATLTEGAIGYRQFDVIAGEKAMAVIKLADGSEPPFGATVMNARKQETGIVNDGGSVYLSGINAG DAMTVHWNGGAQCEVRMPTPLPADMLMNTLLLPCHPLGARTEPDARTQGVPVPVVAPEPEPAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 51 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 5e-177 | 47 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-175 | 47 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-175 | 47 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 9e-177 | 47 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 7e-177 | 47 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 7e-177 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SMWW4_v1c01130 | YP_007403940.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 3e-177 | 47 |
| SMWW4_v1c01130 | YP_007403940.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 4e-177 | 47 |
| SMWW4_v1c01130 | YP_007403940.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 3e-177 | 47 |
