Gene Information

Name : clpE (GHH_c09070)
Accession : YP_007401197.1
Strain : Geobacillus sp. GHH01
Genome accession: NC_020210
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 880029 - 882161 bp
Length : 2133 bp
Strand : -
Note : -

DNA sequence :
ATGCTATGCCAAGCATGCCAACAACGTGAAGCAACAGTGTTTGTCAACTTGCAATGGAACGGGGAAAAACAACAACTTCA
CCTGTGCCATGAATGCTATGAAAAGCAAAAACAACAACTGTCCATTCCGATGAACTTCGGCTTTTCACCGTTTTCCTTTG
ATGACTTCTTTACTAGCCCGTTCACAGCCGCCAACGCCGGAATGAGCGCGCCGAAAACGATGGCGAAGCGCCCGCAAAGC
CATGGCGGTGGATTTTTGGATCAATTCGGCCGCAACTTGACGCAAATGGCGAAAGCGGGCTTGATCGATCCGGTCATCGG
CCGCGACAAAGAAATCGCCCGCGTGATCGAAATTTTAAACCGCCGCAACAAAAACAACCCGGTGTTGATCGGGGAGCCGG
GTGTCGGGAAAACAGCCATCGTTGAAGGGCTCGCGCTGAAAATCGCCGAAGGGCAAGTGCCGGAAAAACTATTGAACAAA
GACGTGTACTTGCTTGACGTGGCGTCGCTTGTCGCCAACACCGGCATCCGCGGTCAATTTGAAGAGCGGATGAAGCGGCT
CATCGCCGAACTGCAAGAGCGGAAAAACATCATCTTGTTCATTGACGAAATCCATCTGCTCGTCGGTGCTGGAGCCGCTG
AAGGCTCGATGGACGCCGGCAATATTTTAAAACCGGCGCTTGCCCGCGGCGAACTGCAAGTCGTTGGGGCGACGACACTC
AAAGAATACCGGCAAATTGAAAAAGACGCGGCTCTTGAGCGCCGCTTCCAACCGGTCATCGTCCACGAGCCGACCGTTGA
GGAAGCGATCGCCATCTTAAAAGGCATTCAGCCAAAATACGAACAATTCCATCATGTCCGCTATACGGACGAAGCGATCG
AAGCGTGCGTGAAATTGTCGCACCGCTACATTCAAGACCGCTTCCTCCCGGACAAGGCGATCGACTTGCTTGACGAGGCC
GGCTCGAAAGCGAACTTGCGCCTCGGCCCGACCGATGAAAAGCAGCTGCAAGAGCGGCTGATGCAAATCGCAAAAGAAAA
AGAACAAGCGGCGAAAGAAGAAAACTACGAATTGGCGGCGAAACTGCGCGCTGAAGAGCTGAAGCTTGAAAAACAACTCG
AGCAAGGCGTCACCCAAGAACGCCCAACAGTCGATGTGGCGGACATCGAGCAAATCATTGCCGAGAAAACCGGCATCCCG
GTCGGCAAACTGCAAGCCGATGAAAAAGAAAAAATGAAACATCTCGAAGAAAACTTGGCGAAAAAAGTGATCGGCCAAGC
GGAAGCGGTGAAAAAAGTCGCGAAAGCCATTCGCCGCAGCCGCGCCGGCTTGAAAGCGAAACACCGCCCGATCGGTTCGT
TCTTGTTCGTCGGCCCGACCGGCGTCGGGAAAACGGAGCTCGCCAAAACGCTCGCCGAGGAGCTGTTTGGCACAAAAGAC
GCCTTGATTCGCCTCGATATGAGCGAATACATGGAGAAACATTCGGTCTCGAAGCTGATCGGTTCGCCGCCGGGCTATGT
CGGCTTTGAAGAAGCCGGACAGCTGACGGAAAAAGTGCGCCGCAACCCATACAGCATCATCTTGCTTGACGAGATTGAAA
AAGCGCACCCGGATGTGCAGCACATCTTCCTGCAAATTTTGGAAGACGGCCGCTTAACCGACAGCCAAGGCCGCACCGTC
AGCTTCAAAGACACCGTCATCATTGCGACAAGCAACGCCGGCGCAACCGATAAAAAAATCACCGTCGGCTTTGAAAAAGA
GGGCAACGGGCAAACAAGCGTCCTTGACTCGCTCGGCGCCTACTTCAAGCCGGAATTTTTGAACCGCTTCGACGCCATCA
TCGAGTTCAAGCCGCTCGAAAAAGCGCACTTGCTTGAGATCGTCGACCTGATGCTCGCCGATGTCAAAGCAGCGATGCGC
GAGCAAGGCATTGAACTCGAAGTGACCGAAGCGGCGAAAGAAAAACTGGCCGAACTCGGCTACCATCCGGCCTTCGGCGC
CCGCCCGCTCCGCCGCGTCATCCAAGAGCATGTCGAAGACAACATCGCCGACTGCCTGCTTGACGCAGATCAATCGGTGC
GCGCAATCCGCATCGACGTTGCAGGAGACGCCATTGTGGCGAAAATCGCCTAA

Protein sequence :
MLCQACQQREATVFVNLQWNGEKQQLHLCHECYEKQKQQLSIPMNFGFSPFSFDDFFTSPFTAANAGMSAPKTMAKRPQS
HGGGFLDQFGRNLTQMAKAGLIDPVIGRDKEIARVIEILNRRNKNNPVLIGEPGVGKTAIVEGLALKIAEGQVPEKLLNK
DVYLLDVASLVANTGIRGQFEERMKRLIAELQERKNIILFIDEIHLLVGAGAAEGSMDAGNILKPALARGELQVVGATTL
KEYRQIEKDAALERRFQPVIVHEPTVEEAIAILKGIQPKYEQFHHVRYTDEAIEACVKLSHRYIQDRFLPDKAIDLLDEA
GSKANLRLGPTDEKQLQERLMQIAKEKEQAAKEENYELAAKLRAEELKLEKQLEQGVTQERPTVDVADIEQIIAEKTGIP
VGKLQADEKEKMKHLEENLAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGTKD
ALIRLDMSEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQGRTV
SFKDTVIIATSNAGATDKKITVGFEKEGNGQTSVLDSLGAYFKPEFLNRFDAIIEFKPLEKAHLLEIVDLMLADVKAAMR
EQGIELEVTEAAKEKLAELGYHPAFGARPLRRVIQEHVEDNIADCLLDADQSVRAIRIDVAGDAIVAKIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-155 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpE YP_007401197.1 ATP-dependent Clp protease ATP-binding subunit VFG0080 Protein 0.0 65
clpE YP_007401197.1 ATP-dependent Clp protease ATP-binding subunit VFG0079 Protein 6e-155 54