Gene Information

Name : GHH_c21030 (GHH_c21030)
Accession : YP_007402372.1
Strain : Geobacillus sp. GHH01
Genome accession: NC_020210
Putative virulence/resistance : Virulence
Product : tripartite ATP-independent dicarboxylate transporter large subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2119206 - 2120489 bp
Length : 1284 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGTTGGTCGTTTTTATCGGGTCGCTGTTAGGGGTCATGGCGCTCGGGATGCCGATCGCGTTTGCGCTCTTGGTCAG
CGGCGTCGCCTTGATGTTTTATTTGGACATTTTTGATACGCAAATCATCGCGCAAAACTTGATCAGCGGCGCAGACAGCT
TTCCGCTGATGGCGATTCCGTTCTTTATGCTCGCCGGGGAGCTCATGAACGCCGGGGGCATTTCGAAGCGGATCATCCGC
TTTGCGATGGCGCTTGTCGGCCATATCCGCGGCGGGCTCGGGTATGTGGCGATCATCGCGAGCGTGTTGTTCGCCGGGTT
GTCGGGGTCGGCGGTGGCCGATACAGCGGCGCTTGGGGCGATTCTCATCCCGATGATGGTCAAAGCTGGGTACAACCGCA
ACCGGTCAGCCGGCCTCATCGCTGCCGGCGGCATCATCGCCCCGATCATCCCGCCGAGCATTCCGATGATCATTTTCGGG
GTCACAAGCGGCGTGTCGATCACGAAGCTGTTTATGGCCGGCATTGTTCCCGGGATTTTGCTTGGCATTTCACTGGCCAT
CTGCTGGTGGTGGGTGACCCGAAGAGATCAAGTGGAAGTGCTTCCACGTCAGTCGGCGAAAGAGATTTGGCGGGCGACCC
GCGAGGCGTTTTGGGCGCTGCTGCTGCCGGTGATCATTGTCGGCGGGCTGCGCGGAGGGGTGTTTACGCCGACCGAGGCG
GCGGTCGTGGCCGCGTTTTACGCGTTGTTTGTCGGTCTATGCATTTACCGCGAGCTGAAATTGAAAGACTTGTTCCACGT
GCTCGTGGCCGCGGCGAAAACGACAAGCGTCGTCATGTTTTTGGTGGCCGCCGCCATGGTGTCGGCCTGGCTCATTACAG
TCGCCAACATTCCGTCGATCGTGACAGATGTGCTCGCGCCGCTCATCGACCATCCGCTGGCGCTGCTTTTGGCCATTAAC
GCCTTGGTGCTGTTGGTCGGAACGGCGATGGACTTGACGCCGACAGTGCTCATTTTGACGCCGGTGCTGATGCCGATTAT
TGAAAAAGCGGGAATCGATCCGGTGTACTTCGGGGTATTGTTTATTTTAAACAACTGCATTGGGCTGCTCACGCCGCCGG
TTGGCACGGTGCTGAACGTCGCCTGCGGGGTGGCGAAAATCAACATGGAGGACATCATGAAAGGAGTTTGGCCATTTTTG
CTTGTGGAAACGCTCCTGTTGCTTTTGTTGATTTTCTTCCCGTCTCTTGTGACCGTGCCGCTTGGGTGGTTTGCGGGGCA
TTGA

Protein sequence : 
MALVVFIGSLLGVMALGMPIAFALLVSGVALMFYLDIFDTQIIAQNLISGADSFPLMAIPFFMLAGELMNAGGISKRIIR
FAMALVGHIRGGLGYVAIIASVLFAGLSGSAVADTAALGAILIPMMVKAGYNRNRSAGLIAAGGIIAPIIPPSIPMIIFG
VTSGVSITKLFMAGIVPGILLGISLAICWWWVTRRDQVEVLPRQSAKEIWRATREAFWALLLPVIIVGGLRGGVFTPTEA
AVVAAFYALFVGLCIYRELKLKDLFHVLVAAAKTTSVVMFLVAAAMVSAWLITVANIPSIVTDVLAPLIDHPLALLLAIN
ALVLLVGTAMDLTPTVLILTPVLMPIIEKAGIDPVYFGVLFILNNCIGLLTPPVGTVLNVACGVAKINMEDIMKGVWPFL
LVETLLLLLLIFFPSLVTVPLGWFAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-48 43
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-48 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-48 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GHH_c21030 YP_007402372.1 tripartite ATP-independent dicarboxylate transporter large subunit VFG1110 Protein 1e-48 43