Gene Information

Name : lolD (H045_04375)
Accession : YP_007396447.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 942451 - 943149 bp
Length : 699 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAGTGAATCGGGCATGAGTGAAAAAGCAATCCTGAGCTGCCGCAACCTGGGCAAATCCTACGAGGAAGGCCCGGAGTC
GGTGGTGGTGCTGTCCAACCTGCAGCTTGAACTGCACCCGGGCGAGCGCGTGGCGATCGTCGGCAGTTCCGGCTCCGGCA
AAAGTACCTTGCTCAACCTGCTGGGCGGCCTCGATACGCCGTCCAAAGGCAGCGTTTGGCTGGCGGGTGAAGAACTGTCG
GCCCTCGGCGAAAAGGCCCGTGGCCAGTTGCGCAACCGCTCGCTGGGCTTTGTGTACCAGTTCCACCACCTGCTGCCGGA
ATTCACCGCGCTGGAGAACGTGTGCATGCCGCTGCTGATCGGCAAGACCGCGATTCCCGAAGCACGCCAGCGCGCCAAGG
CGTTGCTTGAGCGCGTCGGCCTCGGCCATCGCCTGGAGCACAAGCCTGCCGAGCTGTCCGGCGGTGAGCGCCAGCGTGTG
GCGATTGCCCGCGCGCTGGTCAACAACCCGGGCCTGGTGATGCTCGACGAGCCTACCGGCAACCTCGACTCCCACACCGC
CCAGGGCATCAAGGACCTGATGCTGGAACTGAGCACCCAGATGCGCACCGCATTCCTGGTGGTGACCCATGACATGAGCA
TGGCCCGTCAGATGGACCGCGTGCTGCACCTGCAGGAAGGTCATCTGGTCGCCATCTGA

Protein sequence : 
MSESGMSEKAILSCRNLGKSYEEGPESVVVLSNLQLELHPGERVAIVGSSGSGKSTLLNLLGGLDTPSKGSVWLAGEELS
ALGEKARGQLRNRSLGFVYQFHHLLPEFTALENVCMPLLIGKTAIPEARQRAKALLERVGLGHRLEHKPAELSGGERQRV
AIARALVNNPGLVMLDEPTGNLDSHTAQGIKDLMLELSTQMRTAFLVVTHDMSMARQMDRVLHLQEGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_007396447.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 4e-40 45
lolD YP_007396447.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 8e-34 44