Gene Information

Name : H045_20410 (H045_20410)
Accession : YP_007399640.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : type VI secretion system effector Hcp1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4633815 - 4634303 bp
Length : 489 bp
Strand : +
Note : COG3157 Hemolysin-coregulated protein (uncharacterized)

DNA sequence :
ATGGCTGTTGATATTTTCATCAAGATCGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGACGT
GCTGAACTGGAGCTGGGGCATGGCCCAGTCCGGCAACATGCACGTGGGCGGTGGTGGCGGCGCGGGCAAGGTGAATATCC
AGGACCTGTCGCTGACCAAGTACGTCGACAAGGCCTCGCCCAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGAC
AAGGTCAAGCTGACCGTGCGCAAGGCCGGTGGTGAAAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGT
CACGTCCCTGAGCACCGGCGGTTCGGGCAGCGATGATCGCCTGACCGAGAACGTCACGCTTAACTTCGCCCAGGTGCTGG
TCGACTACCAGCCGCAGAAAGCCGACGGCACCAAAGACGGCGGCCCGATCAAGTTCGGCTGGAACATCCGGTCCAACACC
AAGCGTTGA

Protein sequence :
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMAQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCASGKHID
KVKLTVRKAGGESQVEYMVINLEEVLVTSLSTGGSGSDDRLTENVTLNFAQVLVDYQPQKADGTKDGGPIKFGWNIRSNT
KR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0302 NP_454882.1 conserved hypothetical protein Not tested SPI-6 Protein 7e-24 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_20410 YP_007399640.1 type VI secretion system effector Hcp1 VFG2071 Protein 3e-46 77