Gene Information

Name : H045_00190 (H045_00190)
Accession : YP_007395610.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : type III secretion system protein YscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 44403 - 45056 bp
Length : 654 bp
Strand : +
Note : COG4790 Type III secretory pathway, component EscR

DNA sequence : 
ATGATGTTCCAGGGCGTTGATCCGGTTGTACTCGCGCTGTTCTTCGGTGCGATGTCGTTGCTGCCGATGCTGTTGGTCGT
CTGTACGGCGTTCCTCAAGATTGTCATTGTGCTGATGATTACGCGTAACGCCATTGGCGTGCAGCAGGTGCCTCCGAGCA
TGGCGATCAATGGCATTGCGTTGGCCGCCACGCTTTTTGTCATGGCCCCCGTGGGCTATCAGATCGCCGAGAACCTCAAG
ACTTCGCCTCTGGACATGAGCAATGTACAGACGCTTCAGGCAACGGGTCTTGTGGCCATACAACCGCTGCGTACCTTCAT
GACGCGTAACACCGACCCGGATGTACTCACCCATCTGCAGGAAAACAGCGCGCGCATGTGGCCGCCGGAAATGGCGCAAA
GCACCCAGCGAGAGGACTGGGTCCTGTTGATTCCGGCGTTTGTGGTGTCGCAGTTGCAGGCGGGGTTCGAGATCGGCTTC
CTGATCTATATCCCGTTTATCGTCATCGATCTGATCGTGTCCAACCTGCTGCTGGCGCTGGGGATGCAAATGGTCTCGCC
CATGACCATTTCCCTGCCACTCAAGCTGCTGCTGTTCGTCATGGTCTCCGGCTGGTCGCGGTTGCTCGACAGCCTTTTCC
TTTCTTATCTCTGA

Protein sequence : 
MMFQGVDPVVLALFFGAMSLLPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFVMAPVGYQIAENLK
TSPLDMSNVQTLQATGLVAIQPLRTFMTRNTDPDVLTHLQENSARMWPPEMAQSTQREDWVLLIPAFVVSQLQAGFEIGF
LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-63 72
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-63 72
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-63 72
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-66 72
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-66 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-66 70
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-68 67
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-66 66
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-62 66
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-62 66
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-62 66
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-39 48
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-42 47
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-40 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-41 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-41 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-42 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-41 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-41 44
escR AAC31528.1 L0049 Virulence LEE Protein 7e-42 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-34 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-34 43
escR AAC38369.1 EscR Virulence LEE Protein 8e-41 43
escR AAK26700.1 EscR Virulence LEE Protein 9e-42 43
escR AAL57527.1 EscR Virulence LEE Protein 9e-42 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-42 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-41 43
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-42 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-41 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-41 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-34 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-34 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0044 Protein 4e-42 46
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0188 Protein 2e-42 46
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0394 Protein 6e-43 45
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0827 Protein 4e-42 44
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0715 Protein 4e-41 43
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG1773 Protein 6e-37 43
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG0519 Protein 3e-34 42
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG2494 Protein 1e-29 42
H045_00190 YP_007395610.1 type III secretion system protein YscR VFG2131 Protein 3e-34 42