Gene Information

Name : H045_16950 (H045_16950)
Accession : YP_007398949.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3880916 - 3882175 bp
Length : 1260 bp
Strand : +
Note : COG0582 Integrase

DNA sequence : 
ATGTGCGCCCAACCCACGCGCCTCTCAGACCTTAAAGTCAAAGCCGCCAAGCCTAAGGAAAAGGATTACACGCTGACTGA
TGGCAACGGCCTTCAAATGCGATTGAGAAACAATGGCTCCAAACTGTGGAATTTCAACTATATCCATCCCGTAACCAAAA
AACGGATCAACATGGGACTAGGCACATTCCCCGAAGTGAGCCTGGCCCAAGCGCGAAAACGGACTGTTGAAGCCAGGGAA
CTTGTCGCCCAGGGACTAGATCCGAAAGAGCAGCGCGAGACTGATCGCCAGCTGAAAAAAGCCGCGACAGAACACACGTT
TCAAAACGTGGCAACGGCATGGTTTGAACTAAAGAAAGACTCAGTGACAACTGCCTATGCTGAGGATATTTGGCGCTCGC
TCACGCTGCATGTTTTCCCTGACCTGGGCCCGACCCCAATCTCAGCTATCACTGCTCCCATGGTTATCAATCTGCTCAGA
CCTCTTGAGACCAAAGGTAGTTTAGAGACTGTTAAACGGCTGACCCAGCGCCTCAACGAAATCATGACTTACGGGGTGAA
TTACGGGCTCATCCATGCCAATCCACTTAGCGGGATTCGCTCGGTCTTTAAGAAACCAAAAAAGAAAAATATGGCGGCAC
TGCCTCCCGATGAGCTGAACGAGCTCATGGTGGCAATTGCTAATGCCAGTATTAAAAGAACTACGCGCTGCCTAATCGAA
TGGCAGCTCCACACTATGACCCGACCAGCAGAGGCTGCCACCACCCGCTGGGCTGACATCGACTTCGAGAGGAAGATCTG
GACGATCCCAGCGGAGCGCATGAAGAAACGTCGCACACACTTCATCCCGCTTACGGAGCAGGCTCTGGCACTGCTAGAGG
CTATCAAGCCTTACAGTGGAAACAGGGACTATGTGTTTCCTGCTGACCGGAATCCTCGCACCCACTGCAACAGCCAGACC
GCCAACATGGCGCTGAAGCGAATGGGTTTCGAAGGGCGCCTGGTTAGTCATGGCATGCGCTCAATGGCCAGTACCATTCT
CAATGAACATGGCGACTGGAATCCCGAATTGATCGAAGTAGCACTTGCCCACGTCGACAAAGACGAGGTGCGCAGCGCCT
ACAACCGAGCGGATTACATTGAGCGCAGACGGCCCATGATGAACTGGTGGAGTGACCACATTTTACAAGCTGCCTCTGGG
AGCCTGTCCGTCTCGGCATTTCAAACAACCCGAGGTTTGAAAGTTGTAACGATACGCTAG

Protein sequence : 
MCAQPTRLSDLKVKAAKPKEKDYTLTDGNGLQMRLRNNGSKLWNFNYIHPVTKKRINMGLGTFPEVSLAQARKRTVEARE
LVAQGLDPKEQRETDRQLKKAATEHTFQNVATAWFELKKDSVTTAYAEDIWRSLTLHVFPDLGPTPISAITAPMVINLLR
PLETKGSLETVKRLTQRLNEIMTYGVNYGLIHANPLSGIRSVFKKPKKKNMAALPPDELNELMVAIANASIKRTTRCLIE
WQLHTMTRPAEAATTRWADIDFERKIWTIPAERMKKRRTHFIPLTEQALALLEAIKPYSGNRDYVFPADRNPRTHCNSQT
ANMALKRMGFEGRLVSHGMRSMASTILNEHGDWNPELIEVALAHVDKDEVRSAYNRADYIERRRPMMNWWSDHILQAASG
SLSVSAFQTTRGLKVVTIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 5e-136 64
int AAK20803.1 integrase Not tested VPI Protein 5e-136 64
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-136 64
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 7e-136 64
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 7e-136 64
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-110 54
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-100 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-100 50
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-100 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_16950 YP_007398949.1 integrase family protein VFG1092 Protein 5e-101 50