Gene Information

Name : H045_00150 (H045_00150)
Accession : YP_007395602.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 36284 - 36835 bp
Length : 552 bp
Strand : -
Note : COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

DNA sequence : 
GTGAATATCCCTATTGAAGCTTTAGCGCAGCTCGTTGGCAACTCGCCTCAATTCATGCTCCAACTGACGGACGACCAGCA
GAAAAAACTCCGACGTTTTATCCACAAACGCGTACTCAACCCCGAAGATGCCGACGATATTCTGCAACTCACCTATCTTG
AGGCCTGGCGCAACAGGGAACGCTTCAGTGGCCAGGCGAGCCTCAGCACCTGGATGTGCGGGATTGCACAGAACCTTGTC
CGCAACCACTTCCGACGCCTCTATGCCAAACCGGTGCATTGCGAATTCGATGAATCGCTGTGGCATGGACAGGAGGAAAA
CAAGAACCTGGATTGGGAGTTCGAGATCAACCGCAGACTGGAGAAAACCCTGAGCGCCATCGACCACCTGCCTGCAGAAA
TGCGCAAGACGTTGTACGCCTCACTGGAGACCGACGGCAGCTATCAGGATACTGCCAACGTGTTGGACATCCCTATCGGC
ACCGTTCGTTCGCGCCTGTCGCGAGCGCGCGAACAGCTTAAGCGCGTCACGCATAACCCGCTTCAACCATAA

Protein sequence : 
MNIPIEALAQLVGNSPQFMLQLTDDQQKKLRRFIHKRVLNPEDADDILQLTYLEAWRNRERFSGQASLSTWMCGIAQNLV
RNHFRRLYAKPVHCEFDESLWHGQEENKNLDWEFEINRRLEKTLSAIDHLPAEMRKTLYASLETDGSYQDTANVLDIPIG
TVRSRLSRAREQLKRVTHNPLQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 6e-33 52
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 6e-33 52
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 1e-33 51
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 5e-33 51
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 4e-31 49
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 6e-33 49
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 6e-33 49
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 5e-30 48
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 1e-27 47
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 3e-24 46