|
Name : H045_06300 (H045_06300) Accession : YP_007396830.1 Strain : Pseudomonas poae RE*1-1-14 Genome accession: NC_020209 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : - Position : 1364580 - 1366478 bp Length : 1899 bp Strand : - Note : COG0550 Topoisomerase IA DNA sequence : GTGCTCGGCGCCAGTCGCCGCGGCGACGGTTGCTGGCTGGGCAACGGGGTTACCGTCACCTGGTGCATCGGCCATTTGCT GGAAACCGCCCCGCCCGACACTTACGACGCTAAATACAAACGCTGGGTACTGGCCGACCTGCCGATCGTCCCGCAAAAAT GGAAAATGCTGGTCAAGCCCAAGACCGCCAGTCAGTTCAAGGCGGTCAAGCGCCTGCTGGGGGAAGCTCAAGAGCTGATC ATTGCCACCGACGCCGACCGTGAAGGCGAGATGATTGCGCGTGAGTTGGTGGAGCATTGTCGTTATCGCGGGCCGATCCA GCGGCTATGGCTGTCGGCCCTGGACGACGCCTCCATCCGCAAGGCCCTTGCCGCGCTCAAGCCCGGCGCTGAAACCTTCA GCCTGTACCACTCGGCCCTGGGTCGCTCGCGTGCCGACTGGCTGATCGGCATGAACATGAGCCGCCTGTTTACCTTGCTC GGCCGTCAATCCGGTTACCAGGGCGTACTGCCGGTCGGTCGCGTACAAACCCCGACCCTGCGCCTGGTAGTGGACCGCGA CCGCAGCATCGCCGATTTCGTACCGGTGGCTTACTGGGCCATTGATGTCGACCTGCGCCACGACGCCATCACCTTCACAG CTCAGTGGCGCGCCGCTGAAGATGCCTGTGACGACCAGGGCCGCTGCCTCAACCCGCAACTGGCCCGTGACGCCGCCCAA GCCATGACCCAGGCTGCCAGTGCGCGGCTGGTGAAGCTGCGCACCGAGCGCATGCGTGAGGTAGCCCCCCTGCCCTTTGA CCTCGGCACCCTGCAGGAAGTCTGCTCGAAGAAGCTCGGCCTGGGCGCCCAGGAAACCCTGGATATCGCCCAATCCCTCT ACGAGACGCACAAGGTCATCACCTACCCGCGCAGCGACTGCGGCTACCTGCCGTTGAGCCAGCACAGCGACGCGCCGAAG ATTCTCGCGGCGCTGGGCCGGGCGGATGCCGCAGTGAACGAACTGATGCCCCATATCGACCCCCAGCGCCGCTCGCGGGC CTGGAACGACGCCAAGGTCAGCGCCCACCACGGCATCATTCCCACCGGGGCCGGCAAGGATCTCGGGCAACTCGCCGGCA AGCAGCGAGCGGTGTACACGCTGATTCGTGCGCGCTACCTGGCGCAGTTCCTGCCCAATCATGAATATGATCGCACCCAG GCCGATTTCGACTGCGCCGGCCAGGCGTTGCGCGCGGTGGGCAAGGTGGTGATCGAGCCGGGATGGAAGCGCGCACTGCC CGAAGCACTGGCCCCCGCCAAAGGCCGCGAAGCCCCTGCGCCCCAGGCGTTGCCGACGCTGGCGCAAGGTCGGGACTACG TGGTGGCCAGGGTCAACCTCAAGGACCTGTGGACCCAGCCGCCCAAGCCGTTCACCGAAGGCGATTTGATCAAGGCGATG AAGAACGTCGCCAAACTGGTGCAAGACCCACTGCTCAAGCAAAAACTCAAGGACACCACTGGCATCGGCACCGAAGCCAC CCGCGCCGGAATTATCCAGGGCCTGCTGGACCGCGGTTACCTGGTTAAGAATGGCAAGGCGCTGTCGGCCACGCCGGCGG CGTTCAGCCTGATCGACGCGGTGCCCCGCGCCATCGCCGACCCCGGCACCACCGCCATCTGGGAGCAGGCGCTGGACATG GTGCAAAGCGGCGAGATGAGCCTGGAGGAATTCGTCGCCAAACAAGCGGCCTGGATGAGCAAGCAGGTGGCCCGCTGCAA CGGCATGCGCATGACCATCACCGGCCCGGCCAGCCCGGCAGGCCGGGGCGCCGCTCCCTGGAAAAACAAACGCAAGAGCG CCCCGCGCAAGTCGGGCACCCACGTCAAACGCGCGAAAAAGCCACCCACTGCGGGGTAA Protein sequence : MLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDTYDAKYKRWVLADLPIVPQKWKMLVKPKTASQFKAVKRLLGEAQELI IATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLL GRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLRHDAITFTAQWRAAEDACDDQGRCLNPQLARDAAQ AMTQAASARLVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSDAPK ILAALGRADAAVNELMPHIDPQRRSRAWNDAKVSAHHGIIPTGAGKDLGQLAGKQRAVYTLIRARYLAQFLPNHEYDRTQ ADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPTLAQGRDYVVARVNLKDLWTQPPKPFTEGDLIKAM KNVAKLVQDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDM VQSGEMSLEEFVAKQAAWMSKQVARCNGMRMTITGPASPAGRGAAPWKNKRKSAPRKSGTHVKRAKKPPTAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 61 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 4e-173 | 61 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 7e-177 | 61 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-140 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 8e-140 | 49 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-140 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-137 | 48 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 8e-133 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-102 | 41 |
