Gene Information

Name : H045_06140 (H045_06140)
Accession : YP_007396798.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1330687 - 1331355 bp
Length : 669 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCCTGCTATTGGTGGAAGACAACGTACCGCTGGCCGATGAGCTGCTCGCCGGCCTGCAGCGTCAGGGTTACGCGGT
CGATTGGCTAGCCGATGGGCGCGACGCCGTGTATCAAGGCCGCAGCGAACCTTACGACCTGATCATCCTCGACCTTGGCC
TGCCGGGCCTGCCCGGGCTCGACGTATTGGCGCAATGGCGCGCAGCGACGCTGGCCACCCCAGTGCTGATTCTCACCGCC
CGCGACTCCTGGGCCGAACGTATCGAAGGGCTCAAGGCCGGCGCCGACGATTACCTGAGCAAACCCTTTCACCCCGAAGA
ACTGCACCTGCGCATCCAGGCGCTGTTGCGCCGCTCCCATGGGCACGCGAACCAGCCGACCCTGCAAGCGGCCGGTCTGC
ACCTGGATGAAGGACGCCAGTGCGTGCTGCGCGACGGCGAGGAAATCCAGCTGACCGCTGCGGAATTTCGTCTGCTGCGC
TATTTCATGCTGCACCCGGAGCAGATCCTGTCGAAAAGCCATCTGGCCGAGCATCTGTACGACGGTGAGACGGAGCGCGA
CTCCAACGTGCTGGAAGTGCATGTCAATCATCTGCGACGCAAACTGGGACGCAGCGTGATCGAAACCCGGCGCGGCCAGG
GTTACCGGTTTGGCGCCAGCCCTGCATGA

Protein sequence : 
MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLPGLPGLDVLAQWRAATLATPVLILTA
RDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSHGHANQPTLQAAGLHLDEGRQCVLRDGEEIQLTAAEFRLLR
YFMLHPEQILSKSHLAEHLYDGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYRFGASPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_06140 YP_007396798.1 DNA-binding response regulator NC_002516.2.879194.p Protein 3e-34 47
H045_06140 YP_007396798.1 DNA-binding response regulator BAC0083 Protein 3e-26 42
H045_06140 YP_007396798.1 DNA-binding response regulator BAC0638 Protein 4e-23 42
H045_06140 YP_007396798.1 DNA-binding response regulator BAC0487 Protein 1e-24 42
H045_06140 YP_007396798.1 DNA-binding response regulator CP000647.1.gene1136. Protein 4e-26 41
H045_06140 YP_007396798.1 DNA-binding response regulator BAC0530 Protein 4e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_06140 YP_007396798.1 DNA-binding response regulator VFG0473 Protein 8e-30 45