Gene Information

Name : ST548_p3294 (ST548_p3294)
Accession : YP_007391304.1
Strain : Enterobacter aerogenes EA1509E
Genome accession: NC_020181
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5132966 - 5133445 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence :
ATGGAACAACAGTTACCGTTATTTGCTTGTGAATTAACCCCCGCCGACCAGCAGACGGTCAGGAAAGCGTTAATCCTGCT
GGAATGCCAGCTACGCGAACCCGGTGCGTCATTTACCTCAAGCCATGCCGTTCGCGACTGGCTGCGCCTGCATCTCGCGC
CTCTGGAGAGGGAAGCTCTCTCAGTCCTGTGGCTTGACAATCAGCATCGCCTGATAGCCCACGACACGCTGTTTATGGGC
ACCATCAACACTATCACCGTTCATCCGCGCGAGGTCGTAAAGGCCGGTCTGAAGCACAACGCTGCAGCTGCCGTTCTGGC
ACATAACCACCCGTCAGGGGAGGCAGAGCCCAGTTATGCTGACAGACAGATTACGTCCCGTCTTAAACAGGCGCTGGAAC
TGGTCGATATCCGCCTGCTGGACCACTTGGTGGTGGGCGGGATGGAAATCGTTTCGTTTGCAGAGCGAGGCTGGCTGTAG

Protein sequence :
MEQQLPLFACELTPADQQTVRKALILLECQLREPGASFTSSHAVRDWLRLHLAPLEREALSVLWLDNQHRLIAHDTLFMG
TINTITVHPREVVKAGLKHNAAAAVLAHNHPSGEAEPSYADRQITSRLKQALELVDIRLLDHLVVGGMEIVSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-29 61
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-33 60
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 6e-33 60
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 6e-33 60
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 4e-32 60
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 7e-32 60
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 3e-32 60
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-31 60
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 3e-32 60
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-31 60
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 3e-32 60
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 8e-33 60
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 5e-32 59
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-32 59
unnamed AAL08475.1 unknown Not tested SRL Protein 6e-32 59
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-32 59
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-31 59
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-24 59
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-24 59
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-24 59
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-30 58
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-31 58
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-22 55
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-18 46
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 5e-18 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG1528 Protein 2e-32 60
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG0660 Protein 4e-32 60
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG1617 Protein 2e-32 59
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG1066 Protein 3e-32 59
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG1119 Protein 1e-24 59
ST548_p3294 YP_007391304.1 DNA repair protein RadC VFG1678 Protein 8e-32 58