Gene Information

Name : APECO78_02490 (APECO78_02490)
Accession : YP_007379681.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 522297 - 522704 bp
Length : 408 bp
Strand : -
Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit

DNA sequence : 
ATGACTATGTACGCAAAATCCTTTATCGCTCTTGATGGCAACGGACGTCTGACGGGCGCCCGTACTGCACAGGCCGCACC
TTATGCTCACTACACCTGCCACTTGTGTGGCAGTGCACTCAGATACCATCCGCAATACGACACTGAACTTCCCTGGTTTG
AACACACTGACGACAGGCTGACAGAGCACGGTCAACAGTGCCCTTATGTCAGGCCGGAGCGCAGAGAAATACAGTTGATT
AAACGTCTGCAGCAATTCGTACCGGATGCCTTACCCGTGGTGCGTAAAGCCAGCTGGCACTGCAGACAATGTCACCACGA
TTATTATGGGGAGCAGTACTGCACACACTGCCAGACCGGAGGATTCAGTATTCCCCGGACAACTCAGGAGGAAATATGCG
AATTCTGA

Protein sequence : 
MTMYAKSFIALDGNGRLTGARTAQAAPYAHYTCHLCGSALRYHPQYDTELPWFEHTDDRLTEHGQQCPYVRPERREIQLI
KRLQQFVPDALPVVRKASWHCRQCHHDYYGEQYCTHCQTGGFSIPRTTQEEICEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1083 YP_853103.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-60 99
ECO103_3572 YP_003223433.1 hypothetical protein Not tested LEE Protein 4e-52 95
unnamed CAI43833.1 hypothetical protein Not tested LEE Protein 2e-57 93
unnamed ADD91715.1 hypothetical protein Not tested PAI-I AL862 Protein 2e-56 91
SF2981 NP_708755.1 hypothetical protein Not tested SHI-1 Protein 3e-50 90
unnamed CAE85181.1 hypothetical protein Not tested PAI V 536 Protein 9e-48 90
unnamed AAK00467.1 unknown Not tested SHI-1 Protein 2e-50 90
S3186 NP_838469.1 hypothetical protein Not tested SHI-1 Protein 3e-50 90
aec60 AAW51743.1 Aec60 Not tested AGI-3 Protein 5e-51 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_02490 YP_007379681.1 hypothetical protein VFG0645 Protein 8e-51 90