Gene Information

Name : APECO78_18905 (APECO78_18905)
Accession : YP_007382942.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3923463 - 3924122 bp
Length : 660 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGACAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 4e-40 44
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 7e-31 44
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 9e-37 43
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 1e-33 42
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 6e-31 41
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 3e-36 41
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 5e-36 41
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 8e-40 46
APECO78_18905 YP_007382942.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 2e-32 42