Gene Information

Name : APECO78_18605 (APECO78_18605)
Accession : YP_007382884.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Virulence
Product : type II secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3863162 - 3863617 bp
Length : 456 bp
Strand : -
Note : COG2165 Type II secretory pathway, pseudopilin PulG

DNA sequence : 
ATGTATTCGTTATCCCGCACACAAAAACCACGGGCAGGTTTTACCCTGCTGGAAGTGATGGTGGTGATTGTTATTCTTGG
CGTCCTGGCAAGTCTGGTGGTGCCTAACCTGTTGGGCAATAAAGAGAAAGCGGATCGGCAAAAAGCCATCAGCGATATCG
TGGCGCTGGAGAATGCGCTGGATATGTACCGACTGGATAACGGGCGTTATCCGACCACAGAACAGGGGCTTGAGGCGCTG
ATCCAGCAGCCAGCCAATATGGCGGACTCCCGCAACTACCGTACTGGTGGATACATCAAACGACTGCCAAAGGATCCGTG
GGGCAATGATTATCAGTATCTCAGCCCGGGTGAAAAAGGACTGTTTGATGTTTATACCCTGGGGGCGGATGGTCAGGAAA
ACGGGGAAGGCGCTGGCGCAGATATCGGTAACTGGAATTTGCAGGAGTTTCAGTAA

Protein sequence : 
MYSLSRTQKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENALDMYRLDNGRYPTTEQGLEAL
IQQPANMADSRNYRTGGYIKRLPKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 7e-65 99
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-65 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_18605 YP_007382884.1 type II secretion protein VFG2050 Protein 2e-65 99
APECO78_18605 YP_007382884.1 type II secretion protein VFG0180 Protein 3e-37 55
APECO78_18605 YP_007382884.1 type II secretion protein VFG1871 Protein 1e-33 53