Gene Information

Name : APECO78_17845 (APECO78_17845)
Accession : YP_007382734.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3720699 - 3721508 bp
Length : 810 bp
Strand : +
Note : COG3710 DNA-binding winged-HTH domains

DNA sequence : 
ATGTACTGGATTATTAACGATAATATCGAGTTCTGGCCTGAGCACCGAAAATTAATATCGGTACATAACGCCGATCTTAA
CGTCGTTCTGACAACGCCAGCCAGTCGATGTTTATCACTTCTACTTGAAGCTTTTCCTGATGTGGTTGCACAACAAGATT
TTTTCACCAGAGTCTGGGAAGAAGAAGGTATGCGTGTGCCTACTAACACGTTATATCAGAACATATCCATTATCAGACGC
GGATTTCGCGCTGTTGGTGATACTACCCACTCGCTAATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACAT
TAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACACAATGCCCCACCTGCCATAAAAGTTAATGCGG
GATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTG
AGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAACCGAAGCCATTTTTCAAGGATTACAA
GACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGACGATACAATTGATGGGTTGAAAGAGTTCGATAAATATA
AAACACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTTCCCTCTTGCAAAATCCTCACCGGGG
ATGATTGTTATGGCATGCAATAAAAACTATAACCAACATGAAGTGGCAGACTGTTTAACCCTGTCTTACCGTGAGGTTAA
TCGTGATTGA

Protein sequence : 
MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR
GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIML
SAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTDDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG
MIVMACNKNYNQHEVADCLTLSYREVNRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3704 NP_311731.1 sensory transducer Not tested LIM Protein 1e-122 99
marT NP_462658.3 transcriptional regulator Not tested SPI-3 Protein 3e-52 41
marT YP_218667.1 transcriptional regulatory protein Not tested SPI-3 Protein 3e-52 41
marT AAD16956.1 putative transcriptional regulator MarT Virulence SPI-3 Protein 4e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_17845 YP_007382734.1 transcriptional regulator VFG0570 Protein 1e-52 41