Gene Information

Name : APECO78_16855 (APECO78_16855)
Accession : YP_007382536.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Unknown
Product : IS1 transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3513069 - 3513446 bp
Length : 378 bp
Strand : -
Note : COG1662 Transposase and inactivated derivatives, IS1 family

DNA sequence : 
ATGGACGAACAGTGGGGCTACGTCGGGGCTAAATCGCGGCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCTGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATAGCGACGCTGGAGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCATGTAATCAGCAAGCGATATACG
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCATCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC
GGTGGAGCTGCATGACAAAGTAATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRWLFYAYDRLWKTVVAHVFGERTIATLERLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYT
QRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-54 98
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-54 98
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-54 98
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-53 96
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 3e-53 94
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 3e-53 94
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-52 92
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 1e-52 92
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 2e-52 92
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 2e-50 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_16855 YP_007382536.1 IS1 transposase VFG0612 Protein 4e-51 90