Gene Information

Name : APECO78_13625 (APECO78_13625)
Accession : YP_007381898.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein YedW
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2789204 - 2789875 bp
Length : 672 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAGATTTTACTTATTGAAGATAATCAAAGGACCCAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCAT
TGATGCCGTTTCTGATGGCAGAGATGGGCTTTATCTTGCGCTGAAGGATGATTATGCATTGATCATTCTGGATATTATGC
TTCCGGGTATGGATGGCTGGCAGATCTTACAAACGTTAAGAACAGCAAAGCAAACCCCTGTTATTTGCCTTACTGCAAGG
GATTCTGTCGATGACAGAGTCAGAGGGCTGGACAGTGGAGCAAATGATTATCTGGTAAAACCTTTTTCATTTTCTGAGTT
GCTGGCAAGGGTTCGGGCACAATTAAGGCAACATCACGCTTTGAATTCAACATTAGAAATCAGTGGCTTAAGAATGGACT
CTGTAAGTCAAAGTGTGAGCAGGGACAATATCAGTATTACACTGACGCGCAAGGAGTTTCAGTTACTTTGGCTACTGGCC
TCCAGAGCTGGCGAAATTATACCCAGAACGGTTATTGCGAGTGAAATTTGGGGAATCAACTTTGATAGTGATACCAATAC
GGTGGATGTCGCCATTCGCAGGCTCCGCGCAAAAGTTGATGATCCTTTTCCTGAAAAGCTAATCGCCACAATCCGGGGGA
TGGGCTATTCATTCGTAGCGGTAAAAAAATAA

Protein sequence : 
MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTAR
DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-80 77
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-80 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0125 Protein 8e-59 57
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0197 Protein 4e-56 56
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0083 Protein 4e-54 54
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0308 Protein 3e-52 53
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0111 Protein 9e-56 52
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0638 Protein 6e-49 52
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW BAC0347 Protein 3e-50 49
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_010079.5776364.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_002952.2859858.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_007622.3794948.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW AE015929.1.gene1106. Protein 2e-33 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_003923.1003417.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_013450.8614146.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_002951.3238224.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_007793.3914065.p0 Protein 2e-38 42
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW NC_002758.1121390.p0 Protein 2e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_13625 YP_007381898.1 transcriptional regulatory protein YedW VFG0596 Protein 5e-81 77