Gene Information

Name : APECO78_01170 (APECO78_01170)
Accession : YP_007379417.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 255104 - 256519 bp
Length : 1416 bp
Strand : +
Note : COG0305 Replicative DNA helicase

DNA sequence :
ATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGCGAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCC
TCCGCACTCGATCGAAGCGGAGCAGTCGGTGTTGGGCGGTTTAATGCTGGATAACGAACGCTGGGACGATGTAGCCGAGC
GTGTGGTGGCAGACGATTTTTACACCCGCCCACACCGCCATATCTTTACTGAAATGGCGCGTTTGCAGGAAAGCGGTAGT
CCTATCGATCTGATTACCCTTGCGGAATCGCTGGAACGCCAGGGGCAACTCGATAGCGTCGGTGGTTTTGCTTATCTGGC
AGAGCTGTCAAAAAATACGCCAAGTGCGGCGAACATCAGTGCCTATGCGGACATCGTGCGTGAACGTGCCGTTGTCCGTG
AGATGATTTCGGTTGCGAATGAGATTGCTGAAGCCGGTTTTGATCCGCAGGGGCGCACCAGCGAAGATCTGCTGGACCTT
GCTGAATCCCGCGTCTTTAAAATTGCTGAAAGTCGTGCAAACAAAGACGAAGGGCCGAAGAACATCGCCGATGTGCTCGA
CGCAACCGTGGCGCGTATTGAGCAGTTGTTTCAGCAGCCACACGATGGCGTTACCGGAGTAAACACCGGTTATGACGATC
TCAACAAAAAAACCGCTGGCTTGCAGCCGTCGGATTTGATCATCGTCGCCGCGCGTCCGTCGATGGGTAAAACAACATTT
GCGATGAACCTCGTCGAAAACGCGGCGATGTTGCAGGATAAACCAGTACTTATCTTCTCGCTGGAGATGCCTTCAGAACA
GATTATGATGCGTTCTCTGGCGTCGCTGTCGCGCGTTGACCAGACTAAAATCCGTACCGGGCAGCTCGATGATGAAGACT
GGGCGCGCATTTCCGGCACCATGGGTATTTTGCTCGAAAAACGCAATATCTATATCGATGACTCCTCCGGCCTGACGCCA
ACGGAAGTGCGTTCCCGCGCACGCCGTATTGCCCGTGAACACGGCGGCATCGGGCTTATCATGATCGACTACCTGCAACT
GATGCGCGTACCGGCGCTTTCCGATAACCGTACGCTGGAAATTGCAGAAATCTCTCGCTCGCTGAAAGCACTGGCGAAAG
AACTGAACGTGCCGGTGGTGGCGCTGTCCCAGTTGAACCGTTCTCTGGAACAACGTGCCGACAAACGCCCGGTCAACTCC
GACCTGCGTGAATCTGGCTCTATCGAGCAGGATGCGGACTTGATCATGTTTATCTATCGTGATGAGGTGTATCACGAAAA
CAGTGATTTAAAAGGCATCGCGGAAATTATTATCGGTAAACAACGTAACGGCCCAATCGGGACGGTACGCCTGACCTTTA
ACGGTCAATGGTCGCGCTTCGACAACTATGCGGGGCCGCAGTACGACGACGAATAA

Protein sequence :
MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGS
PIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTF
AMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTP
TEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-106 55
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 3e-106 53
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-106 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 2e-106 53
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-87 50
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-100 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-91 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-91 50
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 7e-83 45