Gene Information

Name : APECO78_11405 (APECO78_11405)
Accession : YP_007381454.1
Strain : Escherichia coli APEC O78
Genome accession: NC_020163
Putative virulence/resistance : Resistance
Product : Multiple antibiotic resistance protein marA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2362189 - 2362572 bp
Length : 384 bp
Strand : +
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGTCCAGACGCAATACTGACGCTATTACCATTCATAGCATTTTGGACTGGATCGAGGACAACCTGGAATCGCCACTGTC
ACTGGAGAAAGTGTCAGAGCGTTCAGGTTACTCTAAATGGCACCTGCAACGGATGTTTAAAAAAGAAACCGGTCATTCAT
TAGGCCAATACATCCGCAGCCGTAAGATGACGGAAATCGCGCAAAAGCTGAAGGAAAGTAACGAGCCGATACTCTATCTG
GCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATA
CCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAG

Protein sequence : 
MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYL
AERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-21 43
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-21 43
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-19 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA NC_002695.1.917339.p Protein 9e-57 100
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA BAC0560 Protein 9e-57 100
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP000034.1.gene1596. Protein 1e-56 99
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP001138.1.gene1637. Protein 2e-53 96
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP001918.1.gene2033. Protein 1e-52 93
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP000647.1.gene1624. Protein 2e-52 93
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP001138.1.gene612.p Protein 6e-23 43
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA NC_010558.1.6276025. Protein 2e-21 43
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP000034.1.gene4505. Protein 3e-19 42
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA BAC0371 Protein 1e-19 42
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP001138.1.gene4488. Protein 4e-20 42
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA NC_002695.1.914293.p Protein 1e-19 42
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP001918.1.gene327.p Protein 3e-20 42
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA CP000647.1.gene4499. Protein 8e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA VFG1038 Protein 1e-21 43
APECO78_11405 YP_007381454.1 Multiple antibiotic resistance protein marA VFG0585 Protein 4e-20 42