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Name : APECO78_06160 (APECO78_06160) Accession : YP_007380409.1 Strain : Escherichia coli APEC O78 Genome accession: NC_020163 Putative virulence/resistance : Virulence Product : outer membrane export usher protein SfmD Function : - COG functional category : - COG ID : - EC number : - Position : 1264795 - 1267059 bp Length : 2265 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : GTGTATCGGGTGGATCTCTGGCGTAATGATGAGTTCATTGGTTCACAGGATATCGTATTTGAATCGACAACAGAAAATAC AGGTGATAAATCAGGTGGGTTAATGCCCTGTTTTAACCAGGTACTCCTTGAACGAATTGGCCTTAATAGCAGTGCATTTC CCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGCCACAATTAACTTTGATTTT GCAGCGATGCGCCTGAACATCACTATTCCTCAGATAGCGTTGTTGAGTAGCGCTCACGGTTACATTCCGCCTGAAGAGTG GGATGAAGGTATTCCTGCTTTACTCCTGAATTATAATTTCACCGGTAACAGAGGTAATGGTAACGATAGCTATTTTTTTA GTGAGTTCAGCGGGATTAATATTGGCCCGTGGCGTTTACGCAACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATAT CATTCAGAACAGTGGAATAATATTGGCACCTGGGTACAGCGTGCCATTATTCCGCTGAAAAGTGAACTGGTAATGGGAGA CGGCAATACAGGAAGTGATATTTTCGATGGTGTTGGATTTCGTGGTGTACGGCTTTATTCTTCCGATAATATGTATCCTG ATAGCCAGCAAGGGTTTGCCCCAACGGTACGTGGGATTGCCCGTACGGCGGCCCAGCTAACGATTCGGCAAAATGGTTTT ATTATCTATCAAAGCTATGTTTCCCCCGGCGCTTTTGAAATTACAGATTTGCACCCGACATCTTCAAATGGCGATCTGGA CGTCACCATCGACGAGCGCGATGGTAATCAGCAGAATTACACTATCCCGTATTCAACAGTGCCAATTTTACAACGCGAAG GGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAGCGGTAATAGTCAGCAATCATCGCCTTTCTTTTTTCAGGGC ACGGCACTCGGCGGTTTACCACAGGAATTTACTGCCTACGGCGGGACGCAATTATCTGCCAATTACACCGCCTTTTTATT AGGGCTGGGGCGCAACCTCGGGAACTGGGGGGCAGTGTCGCTGGATGTGACCCATGCGCGCAGTCAGTTAGCCGACGACA GTCGTCATGAGGGGGATTCCATTCGCTTCCTCTATGCGAAATCGATGAACACCTTCGGCACCAATTTTCAGTTAATGGGT TACCGCTATTCGACACAAGGTTTTTATACCCTTGATGATGTTGCGTATCGTCGAATGGAGGGGTACGAATATGATTACGA TTACGACGGTGAGCATCGCGATGAACCGATAATCGTGAATTACCACAATTTACGCTTTAGCCGTAAAGACCGTTTGCAGT TAAATATTTCACAATCACTTAATGACTTTGGCTCGCTTTATATCTCTGGTACCCATCAAAAATACTGGAATACTTCGGAT TCAGATACCTGGTATCAGGTGGGGTATACCAGCAGCTGGGTTGGCATCAGTTATTCACTCTCATTTTCGTGGAATGAATC TGTAGGGATCCCCGATAACGAACGTATTGTCGGACTTAATGTTTCAGTGCCTTTCAATGTTCTGACCAAACGTCGCTACA CCCGGGAAAATGCGCTCGACCGCGCTTATGCCTCCTTTAACGCCAACCGTAACAGCAACGGGCAAAATAGCTGGCTGGCA GGTGTAGGTGGGACCTTACTGGAAGGCCACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTATAC GGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGCTACGCTGGGGGTCGGGTATAACTACGACCGCGATCAACATGACG TTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTTGGGGATACCAATGTT TTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAACCGACTGGCGCGGCTATGCGGT GATGCCGTATGCCACGGTTTATCGGTATAACCGTATCGCGCTTGATACCAATACGATGGGGAATTCCATCGATGTTGAAA AAAATATTAGCAGCGTTGTGCCGACGCAAGGCGCGTTGGTTCGTGCCAATTTTGATACCCGCATAGGCGTGCGGGCGCTC ATTACCGTTACCCAGGGCGGAAAACCGGTGCCGTTTGGATCACTGGTACGGGAAAACAGTATCGGAATAACCAGTATGTG GGTGATGACGGGCAAGTTTATTTAA Protein sequence : MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDF AAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSEFSGINIGPWRLRNNGSWNYFRGNGY HSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQG TALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMG YRYSTQGFYTLDDVAYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSD SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLA GVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYATLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPFGDTNV LIKAPGAGGVRIENQTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL ITVTQGGKPVPFGSLVRENSIGITSMWVMTGKFI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 6e-151 | 46 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-149 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| APECO78_06160 | YP_007380409.1 | outer membrane export usher protein SfmD | VFG0446 | Protein | 0.0 | 73 |
| APECO78_06160 | YP_007380409.1 | outer membrane export usher protein SfmD | VFG0876 | Protein | 5e-157 | 47 |
| APECO78_06160 | YP_007380409.1 | outer membrane export usher protein SfmD | VFG1645 | Protein | 2e-149 | 45 |
| APECO78_06160 | YP_007380409.1 | outer membrane export usher protein SfmD | VFG0912 | Protein | 4e-149 | 45 |
| APECO78_06160 | YP_007380409.1 | outer membrane export usher protein SfmD | VFG0454 | Protein | 9e-136 | 41 |
