Gene Information

Name : DDD_3230 (DDD_3230)
Accession : YP_007378378.1
Strain : Nonlabens dokdonensis DSW-6
Genome accession: NC_020156
Putative virulence/resistance : Unknown
Product : UPF0247 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3471150 - 3471623 bp
Length : 474 bp
Strand : +
Note : -

DNA sequence :
ATGAAAATCACACTTCTAGCCGTAGGTAAAACAGACGACTCTCGCATCGATCAACTCACACAAATGTATGTAGATCGACT
GGGTCATTATATCAATTTTGACCTTGAGTTCCTACCTGATTTAAAGAAAACCAAAAACCTAAGTGAAGACCAGCAAAAAA
ACGAAGAAGGAAAACTTATTCTCAATAAATTAGAGAAAAGTGACTTTGTAACGCTACTAGATGAAAAAGGAAAGAAGTAC
ACCAGCATGCAATTTGCCGAGTTGATCAATAAACGTAGCATTTCTGGATTAAAACGATTGGTTTTCATCATCGGAGGACC
TTATGGATTTTCTCCTGATGTGTACTCTAGAGCCAATTCAAAATTGTCATTAAGCGATATGACTTTTTCTCATCAAATGG
TACGCTTATTTGCTGTAGAGCAGATTTATAGAGCGTTTACTATACTTAGAAACGAACCTTATCATCATGAGTGA

Protein sequence :
MKITLLAVGKTDDSRIDQLTQMYVDRLGHYINFDLEFLPDLKKTKNLSEDQQKNEEGKLILNKLEKSDFVTLLDEKGKKY
TSMQFAELINKRSISGLKRLVFIIGGPYGFSPDVYSRANSKLSLSDMTFSHQMVRLFAVEQIYRAFTILRNEPYHHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 6e-23 44
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 6e-23 44
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-23 44
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 6e-23 44
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-23 44
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 6e-23 44
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 6e-23 44
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 6e-23 44
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-22 44
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 6e-23 44
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 6e-23 44
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 6e-23 44
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 6e-23 44
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-23 43
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-23 43
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 7e-22 41
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-21 41