Gene Information

Name : DDD_1890 (DDD_1890)
Accession : YP_007377038.1
Strain : Nonlabens dokdonensis DSW-6
Genome accession: NC_020156
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2037275 - 2037970 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAATAGAATACTTATAGTAGAGGATGATTTAGAAATTGTTGATTTACTCACTATTCACATGAGAGATTTGAATGC
AATAGTTGATAGTGTTAATGACGGTCGTTCAGGTCTAGAAAAAGCGCTAGAAACCGATTACGATTTGATTTTATTAGATC
TGTCTATACCTATTATTAATGGGGTAGAGGTTTGTAAAGAGTTGAGAAAAACTAAAGATACTCCGATAATCATGGTTACT
GCAAAAAGTGAAGAGATAGATAAAGTTCTAGGTCTGGAAATAGGAGCTGATGATTATATAACTAAACCATTTTCGATTAG
AGAATTAAAGGCGAGAGCAAAAGCAGTTATGCGACGCAGTGAAAAGGCTGCTGCTAATGCTAATAATCAATCAGAAATGG
ATTTTGGCGATTTGAAAATAAACGTAGAAATGCGCCGAGTTACTTTAAATGACCGTAAGGTAGAACTATCGCCTAAAGAG
TTTGATCTTTTGGTGTTACTGGCAAGTCATCCAGGAAGAAGTTACAGTAGATCAGAATTGTTAGATGTCATTTGGGGTTA
TAACTTCTCTGGTTATGAACATACTGTCAATTCTCATGTAAATAGATTGCGGGCAAAGATAGAGCCCGATATGTCACAAC
CCATTTATATTCTTACTACTTGGGGAATAGGTTATAGGTTTAACGAGGAGATTTAG

Protein sequence : 
MENRILIVEDDLEIVDLLTIHMRDLNAIVDSVNDGRSGLEKALETDYDLILLDLSIPIINGVEVCKELRKTKDTPIIMVT
AKSEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSEKAAANANNQSEMDFGDLKINVEMRRVTLNDRKVELSPKE
FDLLVLLASHPGRSYSRSELLDVIWGYNFSGYEHTVNSHVNRLRAKIEPDMSQPIYILTTWGIGYRFNEEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-40 47
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-40 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DDD_1890 YP_007377038.1 transcriptional regulatory protein HE999704.1.gene2815. Protein 2e-42 47
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_012469.1.7686381. Protein 5e-40 44
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_012469.1.7685629. Protein 4e-37 44
DDD_1890 YP_007377038.1 transcriptional regulatory protein AE015929.1.gene1106. Protein 7e-26 42
DDD_1890 YP_007377038.1 transcriptional regulatory protein HE999704.1.gene1528. Protein 7e-28 42
DDD_1890 YP_007377038.1 transcriptional regulatory protein AE016830.1.gene1681. Protein 1e-41 42
DDD_1890 YP_007377038.1 transcriptional regulatory protein FJ349556.1.orf0.gene Protein 3e-34 42
DDD_1890 YP_007377038.1 transcriptional regulatory protein AF155139.2.orf0.gene Protein 1e-36 42
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_002951.3238224.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_007793.3914065.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_002758.1121390.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_010079.5776364.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_002952.2859858.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_007622.3794948.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_003923.1003417.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein NC_013450.8614146.p0 Protein 7e-29 41
DDD_1890 YP_007377038.1 transcriptional regulatory protein AE000516.2.gene3505. Protein 6e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DDD_1890 YP_007377038.1 transcriptional regulatory protein VFG1702 Protein 2e-40 47
DDD_1890 YP_007377038.1 transcriptional regulatory protein VFG1563 Protein 4e-40 46