Gene Information

Name : ssuB (Cst_c19620)
Accession : YP_007373547.1
Strain : Clostridium stercorarium DSM 8532
Genome accession: NC_020134
Putative virulence/resistance : Resistance
Product : aliphatic sulfonates ABC transporter ATP-binding protein SsuB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2139482 - 2140255 bp
Length : 774 bp
Strand : -
Note : -

DNA sequence : 
ATGTATATTTTAATTAATGAAGTTTCGCGGGAATATTTTTTTAAAGATAAAGGCGTAACTGTCGCCCTCGAGAAAATAGA
CATGGAAATTGAAAAAGGGGAATTTGTTTGCTTGCTTGGACCGAGCGGATGCGGAAAATCCACTCTGCTGAATTTAATAG
CAGGTTTTGACGTACCGACTTCAGGTGTCATAAAGATTAACGGCGAGATAGTAACAAAACCTTCAAAAAACAGAATTATG
ATATTTCAAAATTATGGGCTTCTTCCATGGAGGACTGTTTTGAAAAACGTTGAACTTGGGCTTGAAGGGGAAAAATTAAC
GAAAAAGGAGAGGCGTTTTATTGCAGAGGAATATATTGAACTTGTAGGCCTTTCGGCCTATAAAAACCATTACCCGGTCC
AGCTTTCCGGGGGAATGCAGCAGAGGGTCGCGCTGGCAAGGGCGCTGGCAGTGGATCCGGAAATACTTCTTATGGACGAG
CCGTTCGGCGCGCTGGACGCAATGACCCGAATGACCATGCAGGATGAGATTGAAAGAATATGGAAGGAAAAGAAAAAAAC
AATATTATTTGTGACTCACGATATTGAAGAGGCGGTTTTTCTGGCTGACAGAATTGTGGTAATGACACCGTCTCCGGGAA
AAATAAAAAACGTAATTAAAGTGCCATTGCCAAGGAAAAGAGACAGGACATCACCGGATTTTTTAAAAATAAGGGACAGC
ATTTTTGAAGAATTCGGACTTAAGCACTGCACCGAACCTGAATTCTATTTATAA

Protein sequence : 
MYILINEVSREYFFKDKGVTVALEKIDMEIEKGEFVCLLGPSGCGKSTLLNLIAGFDVPTSGVIKINGEIVTKPSKNRIM
IFQNYGLLPWRTVLKNVELGLEGEKLTKKERRFIAEEYIELVGLSAYKNHYPVQLSGGMQQRVALARALAVDPEILLMDE
PFGALDAMTRMTMQDEIERIWKEKKKTILFVTHDIEEAVFLADRIVVMTPSPGKIKNVIKVPLPRKRDRTSPDFLKIRDS
IFEEFGLKHCTEPEFYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 2e-47 43
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-25 43
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 7e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssuB YP_007373547.1 aliphatic sulfonates ABC transporter ATP-binding protein SsuB NC_012469.1.7686878. Protein 1e-25 41