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Name : sctS (LAW_00567) Accession : YP_007365650.1 Strain : Lawsonia intracellularis N343 Genome accession: NC_020127 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : - COG ID : - EC number : - Position : 668861 - 669106 bp Length : 246 bp Strand : + Note : - DNA sequence : ATGACATATACAGCAAAAGCACTTTATTTAGTGCTTGTGCTATCTATGCCACCTATTCTTGTTGCATCACTTGTTGGACT TTTTGTTAGTTTAATTCAAGCAATTACACAACTTCAAGAACAAACACTTGCATTTGGTATAAAACTTCTTGCTGTTGTAC TTACTCTTTTTTTTATGGGTGGATGGTTAACAGGAGAACTCTATAGATATGCTGAAGAAATTTTCAATCGTTTTCATATC ATGTAA Protein sequence : MTYTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWLTGELYRYAEEIFNRFHI M |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 1e-16 | 56 |
| spaQ | NP_457283.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 5e-14 | 55 |
| spaQ | NP_806492.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 5e-14 | 55 |
| spaQ | NP_461810.1 | needle complex export protein | Virulence | SPI-1 | Protein | 5e-14 | 55 |
| spaQ | YP_217808.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 5e-14 | 55 |
| ECs3724 | NP_311751.1 | EpaQ | Not tested | LIM | Protein | 6e-15 | 54 |
| epaQ | AAZ31292.1 | EpaQ | Virulence | ETT2 | Protein | 4e-15 | 54 |
| spaQ | AAS66866.1 | SpaQ | Not tested | SSR-2 | Protein | 3e-15 | 54 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 4e-10 | 54 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 4e-10 | 54 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 4e-10 | 54 |
| ssaS | NP_456108.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-07 | 50 |
| ssaS | NP_805091.1 | type III secretion protein | Virulence | SPI-2 | Protein | 4e-07 | 50 |
| ssaS | YP_216428.1 | secretion system apparatus protein SsaS | Virulence | SPI-2 | Protein | 4e-07 | 50 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | Virulence | SPI-2 | Protein | 4e-07 | 50 |
| ssaS | CAA68200.1 | secretion system apparatus, SsaS | Virulence | SPI-2 | Protein | 3e-07 | 50 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 3e-09 | 50 |
| ysaS | AAS66847.1 | YsaS | Not tested | SSR-1 | Protein | 7e-10 | 49 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 1e-11 | 49 |
| hrcS | ABQ88360.1 | HrcS | Virulence | Hrp PAI | Protein | 2e-08 | 48 |
| hrpO | AAB05076.1 | HrpO | Virulence | Hrp PAI | Protein | 2e-08 | 48 |
| hrcS | AAT96147.1 | HrcS | Virulence | T-PAI | Protein | 2e-11 | 48 |
| hrcS | AAT96201.1 | HrcS | Virulence | T-PAI | Protein | 2e-11 | 48 |
| hrcS | AAG33885.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-11 | 47 |
| hrcS | NP_791221.1 | type III secretion protein HrcS | Virulence | Hrp PAI | Protein | 4e-11 | 47 |
| escS | AFO66341.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-07 | 44 |
| escS | AFO66401.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-07 | 44 |
| escS | AAK26701.1 | EscS | Virulence | LEE | Protein | 2e-08 | 41 |
| escS | AAL57528.1 | EscS | Virulence | LEE | Protein | 2e-08 | 41 |
| escS | CAC81848.1 | EscS protein | Virulence | LEE II | Protein | 2e-08 | 41 |
| escS | YP_003223489.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-08 | 41 |
| escS | YP_003232139.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-08 | 41 |
| unnamed | AAL06355.1 | EscS | Virulence | LEE | Protein | 2e-08 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctS | YP_007365650.1 | type III secretion system protein | VFG0187 | Protein | 2e-13 | 63 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG0395 | Protein | 5e-18 | 59 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG0550 | Protein | 1e-14 | 55 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG1772 | Protein | 5e-15 | 53 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG0520 | Protein | 1e-07 | 50 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG2132 | Protein | 1e-12 | 50 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG0043 | Protein | 1e-14 | 49 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG2454 | Protein | 1e-08 | 47 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG1013 | Protein | 1e-12 | 47 |
| sctS | YP_007365650.1 | type III secretion system protein | VFG2495 | Protein | 0.002 | 46 |
