Gene Information

Name : MYSTI_05357 (MYSTI_05357)
Accession : YP_007362320.1
Strain : Myxococcus stipitatus DSM 14675
Genome accession: NC_020126
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit ClpC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6942450 - 6945128 bp
Length : 2679 bp
Strand : -
Note : -

DNA sequence :
ATGCTGTGTCAGAACTGCCGGACCCGCCCAGCCGCGGTCATGCTCAAGAAGGTGACCAATGGGCAGGAGACCGCCCTCAA
CCTCTGCAACCACTGCGCGAGCGCGATGGGCGTGGGGCTGCCCAACAACAACAATGGGTTCGGCAGTCTGGAGAGCCTCG
TCGAGCAGATGATGGGGCCGCGTCCTCGAGGGCGGGAGAACCTGCTCGCGCAGCTCTCGGAGATGGCCCAGCAGGTGCTC
GAGCGCGCGGCGCGGATGACGCTGGACTCGGGCTACGAGCGGATGCGCATCGAGCACCTCTTGTTGTCGTTGGTGCACTC
CGTCCCGGAGCTGCGTGAGGCGCTCAAGCAGGCGGGAGCGCCCGTGGATGCGTTCGAGGCGAGGCTGGATGCGGTGATGC
CGCGTCGCGAGCCGCGCAAGGCGCAGGGCGTGGCGTTGTCCTCGGGCGTCAAGCGCGTGCTCCAGATTGCGCGGCTCCAG
GCGCTCCAGATGGGGCACAGCTTCATCGGACCCGAGCACCTGCTGTTGGGCATCCTCATGGAAGGGGAGAGCTTCGCCGC
GCAGTTCCTCTCGGGCGTCGACGTCAACGAGCTGCGCAAGCGGCTGGCCGCGTCGGTGGGCGGGGCCAATGTGCCCTCGG
CGGGAGGTGGTGGGCGGCAGGGGAATGGGGGACTTCCTCCGAACCTCACGCGCTTCACCCGCGACCTGTCGGTGCTCGCG
CGCGCGGGAGAGCTGGACCCGGTCATCGGACGCGAGAAGGAGATCACCCGGGTCATCCGCATCCTGAGCCGCAAGACGAA
GAACAACCCGGTGCTGATTGGCGAGCCGGGCGTGGGCAAGACGGCCATCGCGGAGGGGCTCGCCCAGCGGATTGTCTCGG
GCGATGTCCCCGAGGTGCTCAAGGGCAAGCGCGTCCTCTCCCTGGACATCGGGAGCGTCCTGGGCGGCACGAAGTTCCGC
GGCGAGTTCGAGGAGCGCTTCAAGGGCTTGATGGATGAGATTCGCGCCCTCAAGGGGCAGATCATCCTCTTCATCGACGA
GGTCCACACGGTGGTGGGCGCGGGCGGCGCGGAGGGCGCGATGGATGCGTCCAACCTGCTCAAGCCCGCGCTCGCGCGAG
GCGAGCTCCAGTGTCTGGGGGCCACGACGCTGGATGAGTATCGGAAGAACATCGAGAAGGACGCCGCGCTGGAGCGCCGC
TTCCAGCCCGTCATGGTGGCCGAGCCCACGCCGGAGCAGGCCATCGAAATCCTGCGGGGCCTGCGGGATGCCTACGAAGC
GCATCACCGCGTGAAGATTCTCGACGCGTCCCTCACGGCGTCCGTCGAGCTCTCGGACAAGTACGTCAATGACCGCTTCC
TGCCGGACAAGGCCATCGACCTGCTCGACGAGGCGTCGGCGATGGTGAGGCTGGGGGCTCGCACCGCGCCGGACCGGTTG
GGTGAAGTGGAGGCGATGCTGGCCCAGAAGGAGAAGGACAAGGGCGCGGCGGTGGCGGGGGAGCGCTACGACGAGGCGAG
CCGGCTCAAGGCGGACATCGACACGCTGCGCACGGAGCTGGAAGGGCTGCGCACGCAGTGGCAGTTGAAGCGCGGGGTGA
CGGAGCCCGCCGTGACGCCCGAGGACATCGCCACGGTGGTGAGCGAGTGGACGGGGATTCCCGCGCGCAAGCTGCGGCAG
GAAGAGGGGCAGCGGCTGCTGGAGATGGAGGACGCGCTGAAGCAGCGCGTGGTGGGACAGGAGGACGCGCTCCGGGCCAT
CTCGGAGGCCGTGCGTCGCGCCCGCGCGGGCTTGAAGGACCCGAATCGCCCCATCGGCTCGTTCTTGTTCCTGGGCCCCA
CGGGCGTGGGGAAGACGGAGACGGCGCGCGCGCTGGCCGACTACTTGTTCAACGACGAGGCGGCGATGATTCGCCTGGAC
ATGTCCGAGTTCCAGGAGCGTCACACCGTGAGCCGGCTCATCGGCGCGCCCCCGGGCTATGTGGGCTACGAGGAGGCGGG
GAGGCTCACGGAGGCGGTGCGCCGCAGGCCGTACTCGGTGCTGCTCTTCGACGAGGTGGAGAAGGCCCACCCGGATGTCT
TCAACCTGCTGTTGCAGATTCTGGACGACGGGCGGCTGACGGACTCCCGAGGCCGCACGGTGGACTTCAAGAACGCGGTC
ATCATCATGACGTCGAACCTGGGCTCGGAGGCCATGGGCGCGGCGAGGGCGGCGATGGGCTTCCAGCGCTCGGCGGACGA
GGAGCGCACGGGGCGGGAGCGAGCGCGTGACGCGGTGATGAACGCGCTGCGAGGCCACTTCCGGCCCGAGTTCATCAACC
GCATCGACGAAATCATCGTGTTCCATCCGCTCAACGCGGAGCAGCTCCGACGCATCGTGGACTCGCTGCTGGATGCCACG
CGTCGCAAGCTGCACGGGCAGAACCTGAGCCTGGAGCTGACGGACGCGGCGCGCGACTCACTGGCGGAGCGAGGCTTCGA
GCCTCGCTATGGCGCGCGTCCCCTCCGGCGCGTCATCCAGCGGGAAGTGGAGACGGAGATCAGCCGGATGTTGCTGCGGG
GCGAGGTGAGCGAGGGCCAGCGCATCCGCATCGACTTCCAGGACGGGCACTTCGTCTTCAAGGCCGAGCCCGGGGCTCGC
GAGGAGACCGTGCCCAGTCCCGCGGCGCCCCCCGTGTGA

Protein sequence :
MLCQNCRTRPAAVMLKKVTNGQETALNLCNHCASAMGVGLPNNNNGFGSLESLVEQMMGPRPRGRENLLAQLSEMAQQVL
ERAARMTLDSGYERMRIEHLLLSLVHSVPELREALKQAGAPVDAFEARLDAVMPRREPRKAQGVALSSGVKRVLQIARLQ
ALQMGHSFIGPEHLLLGILMEGESFAAQFLSGVDVNELRKRLAASVGGANVPSAGGGGRQGNGGLPPNLTRFTRDLSVLA
RAGELDPVIGREKEITRVIRILSRKTKNNPVLIGEPGVGKTAIAEGLAQRIVSGDVPEVLKGKRVLSLDIGSVLGGTKFR
GEFEERFKGLMDEIRALKGQIILFIDEVHTVVGAGGAEGAMDASNLLKPALARGELQCLGATTLDEYRKNIEKDAALERR
FQPVMVAEPTPEQAIEILRGLRDAYEAHHRVKILDASLTASVELSDKYVNDRFLPDKAIDLLDEASAMVRLGARTAPDRL
GEVEAMLAQKEKDKGAAVAGERYDEASRLKADIDTLRTELEGLRTQWQLKRGVTEPAVTPEDIATVVSEWTGIPARKLRQ
EEGQRLLEMEDALKQRVVGQEDALRAISEAVRRARAGLKDPNRPIGSFLFLGPTGVGKTETARALADYLFNDEAAMIRLD
MSEFQERHTVSRLIGAPPGYVGYEEAGRLTEAVRRRPYSVLLFDEVEKAHPDVFNLLLQILDDGRLTDSRGRTVDFKNAV
IIMTSNLGSEAMGAARAAMGFQRSADEERTGRERARDAVMNALRGHFRPEFINRIDEIIVFHPLNAEQLRRIVDSLLDAT
RRKLHGQNLSLELTDAARDSLAERGFEPRYGARPLRRVIQREVETEISRMLLRGEVSEGQRIRIDFQDGHFVFKAEPGAR
EETVPSPAAPPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MYSTI_05357 YP_007362320.1 ATP-dependent Clp protease, ATP-binding subunit ClpC VFG0079 Protein 0.0 53
MYSTI_05357 YP_007362320.1 ATP-dependent Clp protease, ATP-binding subunit ClpC VFG0080 Protein 1e-152 51