Gene Information

Name : MYSTI_02838 (MYSTI_02838)
Accession : YP_007359838.1
Strain : Myxococcus stipitatus DSM 14675
Genome accession: NC_020126
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3606194 - 3607018 bp
Length : 825 bp
Strand : +
Note : -

DNA sequence : 
GTGAACGCCCAAGCTCCCGCCCGCTCCCGCCTTCCACGCGTCTCGCCTTGGCTGTTCGCGGCCGCCGCGTCGCTGCACCC
CTTCATCGCGCTCGCGGACAAGAAGCGCTCCGCGATGGTCCCGGATGCCGTGGCCAATGAAGCGGTGAGCAGCGATTCGT
TCACCTCGCGGCCGCTCATCCTCATCCTGGCGCTGGCGGCCATGGGCCTGGTGCCCTTCGCGCTGATGATGGTGACGAGC
TTCGTGAAGATTTCGGTGGTGCTCTCCATCGTCCGCTCGGCGCTGGGCACCCAGCAGATTCCGCCCACCCAGGTGATTAC
GGGGCTGGCCGTCATCCTCACCGTCTACATCATGGCCCCCGTGGGCACGGCCATGTACCGGGCGGCGGAGATCGACGTCT
GGGCGAAGGGGCCGGGGGTCTTCTCCTCGTCCACGGTGGGGTCGCTGCTCGAGGGCGCCAGCAAGTCGAAAGAGCCCCTG
CGCGCGTGGCTGATGAAGAAGGTGACGGTGAAGGACCGCTCGCTCTTCTACAACCTGGCCAAGAAGATGCGGACGGGCGA
GGACCGCGACTCGGTGCAGAGCCAGGACTTCATGGTCATCGTCCCGGCCTTCGTCGTCTCCGAATTGAAGGAGGCCTTCC
AGATCGGCTTCCTCCTCTTCGTCCCATTCATCGTCATCGACATGGTGGTGGCCAACATCCTCCTGGCGCTGGGCATGCAC
ATGCTGTCGCCCACCACCATCTCCATGCCCTTCAAGCTCCTCCTCTTCGTCCTGGTGGATGGCTGGTACCTCATCGCCAA
GGGCCTGGTCGTCGGCTACCTGTAG

Protein sequence : 
MNAQAPARSRLPRVSPWLFAAAASLHPFIALADKKRSAMVPDAVANEAVSSDSFTSRPLILILALAAMGLVPFALMMVTS
FVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTAMYRAAEIDVWAKGPGVFSSSTVGSLLEGASKSKEPL
RAWLMKKVTVKDRSLFYNLAKKMRTGEDRDSVQSQDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMH
MLSPTTISMPFKLLLFVLVDGWYLIAKGLVVGYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-41 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-41 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-41 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-41 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-41 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-41 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-41 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-41 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-39 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-31 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-31 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-33 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-33 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-33 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-37 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-31 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-31 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-31 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-31 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-31 41
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG0044 Protein 1e-41 45
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG0394 Protein 7e-37 45
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG0188 Protein 1e-40 43
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG2338 Protein 9e-35 43
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG0827 Protein 9e-32 41
MYSTI_02838 YP_007359838.1 type III secretion system protein VFG1259 Protein 3e-34 41