Gene Information

Name : D781_0071 (D781_0071)
Accession : YP_007342657.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Virulence
Product : P pilus assembly protein, chaperone PapD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 81962 - 82783 bp
Length : 822 bp
Strand : +
Note : PFAM: Gram-negative pili assembly chaperone, C-terminal domain; Gram-negative pili assembly chaperone, N-terminal domain

DNA sequence : 
ATGACCAGACCGGCGCTGCGGCGCACGGTCACCGATAACGGACTGATAACTGTGAAAACGATGCTTAACCAGACTCAAAC
CAGACTGAACATTGCCGTATTGGGCGCGCCGCTGGCCTTTGCCGCGTTGCTGACGGCCGCACCGGCGCAGGGCGCGATCG
CGCTGGATCGCACGCGGGTGATTTTTGACGGTGACCAGAAAACGGTCAGCCTGAATATCAGCAACCAGAACAAACAGCTG
CCTTATCTGGCCCAGGGCTGGATCGAAGATGAGCAGGGCAACAAGATCCAGTCACCGTTTACGGTGCTGCCGCCGGTGCA
GCGGGTGGAGCCGGGCAAACCCAGCCAGGTGAAGATTCAGGCGCTGCCGGCGGCCAAACTGCTGCCGCAGGACCGCGAGA
CGCTCTACTACTTCAACCTGCGGGAGATACCGCCGCGCAGCAACAAGCCGAACACCCTGCAGATTGCGCTGCAGACGCGG
ATCAAAATGTTCTACCGCCCGGCGGCCGTCGCGCCGCAGAAGAATGCGGAACCCAGCCAGCAGGCGCTGACGCTGACCCG
TCAGGGCGATAAGTATGTGGTGAACAACCCGACCCCTTACTACGTGACGCTGGTGGACGGCGCGGCGCGCAAGGGCGGCA
AGAGCATCGCCGATTTTGAGCCGGTGATGGTGGCGCCGAAGGGCAGCGCGCCCCTCGGCGTGTCCGCCGCGGCGATCGGT
ACCGGCCCGGTGCTGACCTATATCAATGACTATGGCGGCCGTCCGCAACTGGTCTTTCGCTGTACGGGCAATCTGTGCCA
GACGGTGGCGGACAAGCGGTAA

Protein sequence : 
MTRPALRRTVTDNGLITVKTMLNQTQTRLNIAVLGAPLAFAALLTAAPAQGAIALDRTRVIFDGDQKTVSLNISNQNKQL
PYLAQGWIEDEQGNKIQSPFTVLPPVQRVEPGKPSQVKIQALPAAKLLPQDRETLYYFNLREIPPRSNKPNTLQIALQTR
IKMFYRPAAVAPQKNAEPSQQALTLTRQGDKYVVNNPTPYYVTLVDGAARKGGKSIADFEPVMVAPKGSAPLGVSAAAIG
TGPVLTYINDYGGRPQLVFRCTGNLCQTVADKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-52 52
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 9e-53 52
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 7e-53 52
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-52 52
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-52 52
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-52 52
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-47 51
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-53 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_0071 YP_007342657.1 P pilus assembly protein, chaperone PapD VFG1547 Protein 6e-53 52
D781_0071 YP_007342657.1 P pilus assembly protein, chaperone PapD VFG0896 Protein 4e-53 52
D781_0071 YP_007342657.1 P pilus assembly protein, chaperone PapD VFG0885 Protein 1e-47 51