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Name : D781_0070 (D781_0070) Accession : YP_007342656.1 Strain : Serratia marcescens FGI94 Genome accession: NC_020064 Putative virulence/resistance : Virulence Product : P pilus assembly protein, porin PapC Function : - COG functional category : - COG ID : - EC number : - Position : 79422 - 81965 bp Length : 2544 bp Strand : + Note : PFAM: Type VII secretion system (T7SS), usher protein; PapC C-terminal domain; PapC N-terminal domain DNA sequence : ATGATGCTTTCACCGGCAGGGAAGTTATTTCGCCTGAAAACGCTGGGGCTGTGTATTGCCCTGGCGTTTGGCAGCCCCGT AACCTGGGTTTTTGCCGCTGAAGAAATTCAGTTTAATACCGATGTATTAGATATTAACGATCGTCAGAATATCGATCTGA GCCAGTTTACCCGCAGCGGCTATATTATGCCGGGTAATTACACCATGGCGATTCACGTGAATAAAAACGATCTGCCTGAA CAGCCGATCGCGTTTGTCGCGCCGGAAAACGATGATAAAGGCAGCGAAGCGTGTCTGCCGCCGGCATTGGTTCAACAGCT AGGGGTAAAGGAAGGGCTAGAAAAAACGCTGCGCTGGACACACGGCGGGCAGTGCCTGGATTTACGCAGCCTGGCCGGCA TGGAGGCGCGCGGCGATTTAAGCTCCTCCTCGCTGTATCTCACTATCCCTCAGGCCTATCTGGAATACAGCTCGGAAAAC TGGGACCCGCCGTCACGCTGGGATAACGGTATTTCGGGGCTGCTGCTGGATTACAACCTCAATGCACAAACGCAAAAGAA CCTGAAGGTGGGCGGCAGCGGCTACAGCCTGAGCGGCAACGGCACCGCCGGCGGCAACCTGGGCGCCTGGCGGCTGCGCG CCGACTGGCAGGCCAGCATTAACCACCAGACCGGTTCGGGCCAGGGCACCGACCGACAGTTCGACTGGAGCCGCTATTAC GCCTACCGGGCGATACCGGCGCTGCGCTCCCGTCTGACGCTGGGGGAGGATTACCTCAATTCCGATCTGTTCGACAGCCT GCGCTTTACCGGCGCCAGCCTGCGGTCGGACGACAATATGTTGCCGCCGAACCTGCGCGGCTACGCGCCGGAAATCAGCG GCGTGGCGAAAACCAATGCCAAGGTGGTGGTCAGCCAGCAGGGGCGCGTGCTGTATGAGACCCAGGTGGCCGCCGGCCCG TTCCTTATTCAGGATATTAACGACGCGGTTTCCGGCGAGCTGGACGTGCGGGTGGAAGAGCAGGACGGCAGCGTGCAGCA GTTCAAGATGAACACCGCCAGCATCCCGTATTTGACGCGGCCGGGCCGGGTGCGCTACAAGCTGGCCGCCGGCAAGCCGA CGGAGTGGGGGCACCACCTGCGCGGGCCGCTGTTCGGCACCGGTGAGTTTTCCTGGGGGATCAGCAACGGCTGGTCGCTG TACGGCGGCGCCATCGGCGGCGGGGATTACAACGCGCTGTCGTTAGGGCTGGGGCGCGATCTGATGCTGCTGGGGGCGCT CTCCTTCGACGTCACCCAGTCGCGGGCCAGACTGCCGCAGGAAGGGGTCAAGAGCGGCGGTTCGTACCGACTGAGCTATT CGAAAAACTTTGATGAGTACGACAGCCAGGTCACCTTCGCCGGCTACCGCTTCTCCCAGGAAGACTTTATGAGCATGGGC GAGTACCTGAACGCCCGCTATCAGGGGAATCGCAACGGCAAGAGCAAGGAGATGTACACCCTCTCCTTCAATAAACAGTT CCGCGATCTGGGGCTGAGCACCTACCTCAACTACAGCCATCAGACCTATTGGGACCGGGCGGCGAATGACCGTTACAACC TGATGCTGTCGCGCTATTTCGACCTCGGCAAGTTTAAAAACCTCAGCCTGTCGCTGTCGGCCTACCGCAACCGCTACAAC GCGCGCAATGACGATGGCATGTACCTGTCGCTGTCGGTGCCGTGGGGCAGCAGCGGTACGCTCAGCTACAACACCACCAT TGACCGCAACGACAATACGCACCGCGTCGGTTACTACGACCGGGTGAGTGAACACGACAACTATCAGCTGAGCGCCGGCA CCGGACGCAGCGGGGCGACGCTCAGCGGCTACTACAGCCATGAAGGCGATATGGCCCAGGTGAACGCCAACGCCAGCTAT CAGGCCGGCCGCTACAGCGCCGTCGGCCTGGCCGCGCAGGGCGGAATGACGCTCACGGCGGAAGGCGGGGCGCTGCACCG CATCACGACGCCGGGCGGCACCCGGCTGCTGCTGGATACCGACGGCGTGGCCGACGTGCCGGTGCGCGGCTACGGCAGCA CGGTGGCGACCAACCGCTTTGGCCAGGCCGTGGTGACGGACGTCAACAGCTATTACCGCAACAAGGCCAGCATCGATCTG AACGCGCTGGGAGACAAGGTAGAGGCGACGCGTTCGGTGGTACAGGCCACCCTGACCGAAGGTGCCATCGGCTACCGGCG TTTTGCGGTGATCGCCGGTGAAAAGGCGATGGCGATTATCAAACTGGCGGACGGCAGCGAGCCGCCGTTCGGCGCCACGG TGACGAATGCGCGCAAGCAGGAAACCGGCATCGTCAACGACGGCGGCAGCGTTTACCTGTCTGGCATTAACCCGGGCGAG GCGATGACGGTGCACTGGAACGGCGCGGCGCAGTGCGAGGTGCATCTGCCGGCACCGCTGCCGGCCGATATGTTGATGAA TAACCTGCTGCTGCCTTGTCGCCCCGTCGGCGCAGGCGGCCAGGAGATCCCCCCGACCCGATGA Protein sequence : MMLSPAGKLFRLKTLGLCIALAFGSPVTWVFAAEEIQFNTDVLDINDRQNIDLSQFTRSGYIMPGNYTMAIHVNKNDLPE QPIAFVAPENDDKGSEACLPPALVQQLGVKEGLEKTLRWTHGGQCLDLRSLAGMEARGDLSSSSLYLTIPQAYLEYSSEN WDPPSRWDNGISGLLLDYNLNAQTQKNLKVGGSGYSLSGNGTAGGNLGAWRLRADWQASINHQTGSGQGTDRQFDWSRYY AYRAIPALRSRLTLGEDYLNSDLFDSLRFTGASLRSDDNMLPPNLRGYAPEISGVAKTNAKVVVSQQGRVLYETQVAAGP FLIQDINDAVSGELDVRVEEQDGSVQQFKMNTASIPYLTRPGRVRYKLAAGKPTEWGHHLRGPLFGTGEFSWGISNGWSL YGGAIGGGDYNALSLGLGRDLMLLGALSFDVTQSRARLPQEGVKSGGSYRLSYSKNFDEYDSQVTFAGYRFSQEDFMSMG EYLNARYQGNRNGKSKEMYTLSFNKQFRDLGLSTYLNYSHQTYWDRAANDRYNLMLSRYFDLGKFKNLSLSLSAYRNRYN ARNDDGMYLSLSVPWGSSGTLSYNTTIDRNDNTHRVGYYDRVSEHDNYQLSAGTGRSGATLSGYYSHEGDMAQVNANASY QAGRYSAVGLAAQGGMTLTAEGGALHRITTPGGTRLLLDTDGVADVPVRGYGSTVATNRFGQAVVTDVNSYYRNKASIDL NALGDKVEATRSVVQATLTEGAIGYRRFAVIAGEKAMAIIKLADGSEPPFGATVTNARKQETGIVNDGGSVYLSGINPGE AMTVHWNGAAQCEVHLPAPLPADMLMNNLLLPCRPVGAGGQEIPPTR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 53 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 7e-179 | 50 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-177 | 50 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-177 | 50 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 9e-179 | 50 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-178 | 50 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-178 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| D781_0070 | YP_007342656.1 | P pilus assembly protein, porin PapC | VFG1548 | Protein | 4e-179 | 50 |
| D781_0070 | YP_007342656.1 | P pilus assembly protein, porin PapC | VFG0884 | Protein | 4e-179 | 50 |
| D781_0070 | YP_007342656.1 | P pilus assembly protein, porin PapC | VFG0895 | Protein | 4e-179 | 50 |
