Gene Information

Name : D781_3946 (D781_3946)
Accession : YP_007346321.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma factor, sigma-70 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4163265 - 4163810 bp
Length : 546 bp
Strand : +
Note : PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family

DNA sequence : 
ATGATGAATTCATTCACTGCCAGCGCAATGCCGAACAACGCCATAGATATACCGGTGGACTGGGAAGGTATTTTCAAGCA
ATCGAACAAAAAGCTGATTAATTTCATTCGAAGGAGAGTCGCCAGTACGGAGGATGTGGAAGATATCGCGCAAATGACCT
GCCTGGAAGTGCTGCGCAACCGGCATAAATTTACCGGCGCCTCACTGCCGGAAACCTGGATGTTCGGCATCGCCATCAAT
CTGATCCGCAACCACTACAAGCGTCAGCAGCACCGTTATCTGTTTGATACGTTGAATGATGAGGTGCTGGAAAATCTGCT
GCATGACGACGATCCGAGCGCGCTGACCGAGCATCAGCGGCTGCTCACCACCGCCCTGACCTCGATTGACCGGCTGCCGG
AAGAAATTAAACATATGCTGACGATTTTAATCGGCGATGACGGCAGCTATCAGGATATCGCCCAGCAGCTGAATATCCCG
ATCGGCACCGTGCGCTCCCGTCTGTCGCGCGCCAGAGAAACGCTGAAAAGCCAGGTATTCCGCTGA

Protein sequence : 
MMNSFTASAMPNNAIDIPVDWEGIFKQSNKKLINFIRRRVASTEDVEDIAQMTCLEVLRNRHKFTGASLPETWMFGIAIN
LIRNHYKRQQHRYLFDTLNDEVLENLLHDDDPSALTEHQRLLTTALTSIDRLPEEIKHMLTILIGDDGSYQDIAQQLNIP
IGTVRSRLSRARETLKSQVFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 2e-44 56
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 1e-32 48
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 5e-34 48
hrpL AAT96254.1 HrpL Virulence S-PAI Protein 4e-34 48
hrpL AAT96295.1 HrpL Virulence S-PAI Protein 4e-34 48
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 5e-25 46
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 3e-24 46
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 2e-24 44
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 2e-24 44
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 7e-25 44
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 7e-25 44